Gene detail

Detailed information of HSymV2.0_g04.07295_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_4:20934160...20935314
NR annotation: XP_047138117.1, synaptosomal-associated protein 25 [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PC54	Synaptosomal-associated protein 25-B OS=Danio rerio OX=7955 GN=snap25b PE=2 SV=1
P36978	Synaptosomal-associated protein 25-B OS=Carassius auratus OX=7957 GN=snap25b PE=2 SV=1
O09044	Synaptosomal-associated protein 23 OS=Mus musculus OX=10090 GN=Snap23 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005642 (this species only)

Pfam domain

No Pfam domain signature was detected for HSymV2.0_g04.07295_t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR000727 all species →	Domain	Target SNARE coiled-coil homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19305 all species →	SYNAPTOSOMAL ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006906 all species →	Biological Process	vesicle fusion	Interproscan
GO:0016082 all species →	Biological Process	synaptic vesicle priming	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0031629 all species →	Biological Process	synaptic vesicle fusion to presynaptic active zone membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03711	fur, zur, furB; Fur family transcriptional regulator, ferric uptake regulator	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.