Gene detail

Detailed information of HSymV2.0_g04.07521_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_4:24094414...24106401
NR annotation: XP_012555163.2, methionyl-tRNA formyltransferase, mitochondrial [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AYY8	Acetyl-coenzyme A transporter 1 OS=Rattus norvegicus OX=10116 GN=Slc33a1 PE=2 SV=1
Q99J27	Acetyl-coenzyme A transporter 1 OS=Mus musculus OX=10090 GN=Slc33a1 PE=1 SV=1
O00400	Acetyl-coenzyme A transporter 1 OS=Homo sapiens OX=9606 GN=SLC33A1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005528 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02911 all species →	Formyl_trans_C	Formyl transferase, C-terminal domain	Domain	Interproscan
PF13000 all species →	Acatn	Acetyl-coenzyme A transporter 1	Family	Interproscan
PF00551 all species →	Formyl_trans_N	Formyl transferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005793 all species →	Domain	Formyl transferase, C-terminal	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR041711 all species →	Domain	Methionyl-tRNA formyltransferase, N-terminal domain	Interproscan
IPR036477 all species →	Homologous_superfamily	Formyl transferase, N-terminal domain superfamily	Interproscan
IPR011034 all species →	Homologous_superfamily	Formyl transferase-like, C-terminal domain superfamily	Interproscan
IPR024371 all species →	Family	Acetyl-coenzyme A transporter 1-like	Interproscan
IPR002376 all species →	Domain	Formyl transferase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11138 all species →	METHIONYL-TRNA FORMYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004479 all species →	Molecular Function	methionyl-tRNA formyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0071951 all species →	Biological Process	conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0008521 all species →	Molecular Function	acetyl-CoA transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0035348 all species →	Biological Process	acetyl-CoA transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HSymV2.0_g04.07521_t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.