Gene detail

Detailed information of HSymV2.0_g05.08101_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_5:5819318...5826152
NR annotation: XP_002161479.1, F-box/WD repeat-containing protein 11 [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

HSymV2.0_g05.08101_t1

TATCATAATATCGAGATCAACGCGAAAATATACGCAGCCAAAAATAATAAACATTTTAACATCAAAAATATGAGATATTAGGAAAGAAATCAGCGAAAGTACAGTAATTAACGATTTATATATATGTTATGGATTTTGAAATGGCACCAGTAATGACAGACACTATTCCATCCGATGAAATGATTACAGACGCTGAAAACAGAATGGCTGATATAGAGATTACATCCCTTTCATCGCTAAGACATGTTAGTAGCGAAAGATACGAACTTGAAAAGGAAAAATGTTTTAAAAATTTTGATTCATGGTCTCCAGAAGACCAAGTAGACTTTATAGAAGACCTATTACTGCGTATGACACATTTCCAACATGGTCATATAAATACTTTTTTAAAGCCAATGCTTCAAAGAGACTTTATATCTAATTTACCAGCTAAAGGACTGGAGCCTGTAGCTGAAAAAATCTTATCTTACTTGGATGCAGACTCACTACGGTCTGCTGAATCTGTTTGTAAAGAATGGCAACGCGTCATAGCTGACGGTATGCTGTGGCGGAAATTAATACATAGAAAAGTGTTACACGATCCATTGTGGAAAGGATTAGGGGAACGAAGAGAATGGATTAACTCCATGAACAGACCATCACAAAAATCTGATCATGTATACTACAGGACACTTTATCCAAAGATTGTCCAAGACATTAATAGACTAGAATCAAACTGGAGGTCTGGTAGACATGGTCTTCTAAAAATACACTGTAGAAGTGAAAACATTAAAGGTGTATACTGTCTCCAGTACGATGATGAAAAAATAGTTAGTGGTCTTAGGGATAATACAATTAAGTTATGGGATCGAAAATCTTTAGACTGTACTCAGGTCTTACATGGACATACAGGTTCTGTTCTTTGCCTTCAATATGATGAACGAATCATTGTTACTGGATCTAGTGATGCTACTGTTAGAATATGGGATGTACACACTGGCGAAATGTTAAACACACTAATACATCATTGCGAAGCTGTTCTTCATTTACGTTTTCAAGATGGGATTATGATTACATGTTCTAAGGATAGATCGATCGCTGTGTGGGACTTGCAATCACCTACTGACATTACACTACGGAGAGTGTTGGTCGGACACAGAGCGGCTGTTAATGTTGTTGACTTTGATGATAAATACATCGTGTCTGCATCAGGAGACAGAACAATTAAGGTTTGGAACACAGGAACGTGTGAATTTGTAAGAACATTAAATGGTCATAGACGAGGAATTGCTTGTCTGCAATACAGAGCAACTTTGGTTGTAAGCGGATCCTCTGATTTTACTATAAGGTTATGGGACATCGAGGTAGGAACGTGTTTACGCACATTGGAAGGACACGAAGAGCTCGTCAGATGCATTAGATTTGATTCTAAACATATCGTCAGTGGTGCGTACGATGGTAAAATAAAAGTATGGGATTTACAAGCTGCGTTAGATCCCCGGACACCTCCTGCTTCTCTTTGCATTCGCACATTGATTGAACACACCGGTCGCGTTTTTCGACTTCAATTCGACGATTTCCAAGTCATAAGCAGTTCACATGATGATACTATTCTAATATGGGACTTTTTAGATGTTCCACAAGACAATATCAAGAGTTCATCAAACTCTCGTTCTTACCCGTACATGACTTCTTAATTTTGTCGAACCTCACCACTTTAGCTATCGTAGAGCTGGCTATCTGCGTTTCAATGAAATTTGCGCATTCCTTCAACAGCAATTAGCGAAGCATGCTACCTCTGCTTATTTTCTTATTTATCATTTTGTTAGCTGACTTTTATGACAAACAAAAGTAACTATAGAGCGTAGCTTCAATGCGTAGCTATATTTCGTAGCGTGAGAACTTAATGAATTGAATGTTTAAAGAAGAGACTCTTCTTAAATTAATAAAAATATTTAGTTTTCTACAGTAAAATTACGACTTAGTTTTTTGTTACATTCAAATAATTTTACCAGGGAAGTTTTCTCGCATTTTCCATGTTCAGTAATAAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A2R8RWN9	F-box and WD repeat domain-containing 11-B OS=Danio rerio OX=7955 GN=fbxw11b PE=2 SV=1
Q9UKB1	F-box/WD repeat-containing protein 11 OS=Homo sapiens OX=9606 GN=FBXW11 PE=1 SV=1
Q5SRY7	F-box/WD repeat-containing protein 11 OS=Mus musculus OX=10090 GN=Fbxw11 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005708 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF12125 all species →	Beta-TrCP_D	D domain of beta-TrCP	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR021977 all species →	Domain	D domain of beta-TrCP	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR050995 all species →	Family	WD repeat and F-box domain-containing protein	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14604 all species →	WD40 REPEAT PF20	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03362	FBXW1_11, BTRC, beta-TRCP; F-box and WD-40 domain protein 1/11	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.