Gene detail

Detailed information of HSymV2.0_g05.08341_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_5:8566402...8572491
NR annotation: KAG1083064.1, hypothetical protein G6F42_022348 [Rhizopus arrhizus]
Species Hydractinia symbiolongicarpus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O74418	U4/U6.U5 tri-snRNP-associated protein 3-like protein C162.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC162.01c PE=1 SV=1
Q6DH74	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio OX=7955 GN=snrnp27 PE=2 SV=1
Q8K194	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090 GN=Snrnp27 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007790 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08648 all species →	SNRNP27	U4/U6.U5 small nuclear ribonucleoproteins	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013957 all species →	Domain	U4/U6.U5 small nuclear ribonucleoprotein 27kDa protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31077 all species →	U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0008380 all species →	Biological Process	RNA splicing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12846	SNRNP27; U4/U6.U5 tri-snRNP-associated protein 3	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of HSymV2.0_g05.08341_t1 across 44 RNA-seq samples of Hydractinia symbiolongicarpus. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

44Samples

44TPM > 0

3Conditions

129.7Max TPM

60.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Whole embryo	36	36	55.44	121.95
Whole embryo · Triptolide 20 uM	4	4	84.82	129.69
Whole embryo · DMSO 0.5%	4	4	81.27	106.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR24482163	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	121.95
SRR24482162	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	119.58
SRR24482161	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	112.63
SRR24482166	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	81.30
SRR24482165	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	68.85
SRR24482168	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	67.15
SRR24482177	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	65.71
SRR24482159	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	59.60
SRR24482135	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	59.29
SRR24482167	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	58.33
SRR24482140	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	57.66
SRR24482144	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	56.07
SRR24482145	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	55.71
SRR24482141	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	54.90
SRR24482136	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	54.74
SRR24482142	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	54.41
SRR24482137	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	53.98
SRR24482170	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	51.37
SRR24482160	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	50.58
SRR24482153	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	50.37
SRR24482138	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	50.03
SRR24482134	Whole embryo	Whole embryo	5 hpf	not recorded	SRP436676	50.00
SRR24482143	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	49.60
SRR24482169	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	46.98
SRR24482172	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	43.85
SRR24482171	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	42.36
SRR24482139	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	39.76
SRR24482175	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	39.72
SRR24482157	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	39.29
SRR24482133	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	39.18
SRR24482158	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	39.09
SRR24482173	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	37.91
SRR24482176	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	36.02
SRR24482155	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	33.44
SRR24482174	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	32.74
SRR24482156	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	21.80
SRR24482146	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	129.69
SRR24482147	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	99.46
SRR24482150	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	58.58
SRR24482149	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	51.57
SRR24482148	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	106.87
SRR24482154	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	97.59
SRR24482151	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	65.06
SRR24482152	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	55.57

Source: CnidoSite RNA-seq expression matrices (HSYMB_TPM, StringTie quantification over 44 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.