Gene detail

Detailed information of HSymV2.0_g06.10023_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_6:9154231...9165497
NR annotation: XP_047144547.1, inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X2 [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HSymV2.0_g06.10023_t1

ATGGAAATAGACACTTTTGATGATAATTTTACATTCAGTACGCCACAAGATTGGTCAAGGCGTCCAAGATTAGACAGTCGCATGTCAGTTTGCTTGCCAAGTAAAGGTTTATTTAATGCACCAGGAGAAAACAATTGCTTTTTGAATGCTAGTGTCCAGGTTTTATGGCATCTGAATGTGTTTCGAAGAAGCTTTAGGTTATTAGAGGGGCATGCTTGTTTGGAAGATGCTTGTATATTTTGTGCTCTTAAGAGAATATTTCAACAATTCCAAGACAGTGATGCAGCAGTTCTGGCTCCCGACGGATTACGTCAAGCTATGGCTAATGCATTTAGTGATGACCAGCGTTTCCAACTGGGAAGAATGGATGATGCTGCTGAATGCTTTGAGAACATATTAAACCGACTGCATAGCCACACAGCGATTGACGAACCAGACGATGCATGTGCAGCAAAACACTGCATTCCTCATCAAAAGTTTGCTCTCCATATACTTGAGCAGACTTTTTGCAAGTGTCAAGCAAGTGGTGAACCGAAGTCTTTTTATCAGTTTGTGTACTATGTTGCTGCTTCAGTTATTGTAGATCAAATGAAAAATGATGATGGTGAGAGTTTAACATTTGGGCAGGTCTTAAAATCAACAGTGTCTGGGGAATCAAGACCATGTCCGGATGAACGACGATGTTACTACAAGAACGCCCCAGATTCAATGACAACAGTACAAACAACTCTGCTTAACTGTCCCGATGTTGTGACTGTTGGTATTATATGGAACACAGACAGTCCAAGTGCGAGTTATATAACTGATGTGTTGGATTGTATTGGTCAGAGTTTGTATTTGATAGATCTGTTTGATAACATTCCTGACAATGAATACAGACGTTTAGAACTGAAGTTGGCTGGTGTTGTTTCATATTATGGTCGACATTATACTTCGTTCTTTTACAACGCAAGAGAGGAACAGTGGGTGTATTTTGACGACGCACGCGTGAAGAAGATTGGAAGTAAGTGGGAACACGTGGTCTCAAAATGTCGCCGCAATCGATTCCAACCATTGCTGGTTGTTTATACAAACTCTTCAGGTGTGCCCATCGACGCAGCTAACGCACCATCTTTAGTGGAAATCGTGTCAAAAGAAAAACTTCTGTACAAACCACAGAAGTCACCAACGCATCGTAAACAAAAACATCGTAAACATAAGAAAAACAGGTCGCGCACAAGCTCGCCCAGTTTGAGCCCCACTGATGGGGTGGAGAGATCTTTCTCCAGGAGTTCAGGTGCTTCGATGTCGCCCAGAAGTCCTAAAAAGCATAAAACGAAAAGAGAAGGACAACGCCCTGTCGAAGTAACAGACGACACTTCTGTTTTTGAAAACCACTTATCAAGTAAGATGACACGAACAGGTATTCATGGAAGCCTGTCAGACAACTCCATTGTGGATTCGACTAGAAACGGTCAGACCTTTGAATACTCAAAGACTGGTAGTTCCCTCGAAAACTCTTTCGACGAAATAGACAATTTAACTAAGAAACGGTCAGGTTCTATTAAGAAAAAGTTTAGCAATGCTATGAAGAATATAAACCCTCTGGGTAAAAAACCGATAGTTAAGAACGTTAACGCGAAACTTTCCGACAGTTACGATAAGATATCGCACTCGAACTCTCTAAACGATATATGTTATGCCGACATTGGGTTTAACTCGCCCTACCAAACGCGAAATGAACCTCAAAGTTCGGACAATGCCCCGACGAAACAACTTGAAAATCTGTCAATACATCAAGCCATGCTAAATCGTAGCAGAGATGATCTGACCAAGACTGAAAACATGTCCACCGATATGGAAAAGGACTATAAATACGTCGAAGAAAATCGAGACAAACATAATGGTTACCATGTAAACGACGTTAACAGCAGACCTGTGCAATCAGCTGATCAAGTTATAGAGAATTACCAAAAAACTGACGCAAACGATTTTCTGCAATATGAGCGAGAAAATTCTAATAGAGCGAATGCGCCAGTGAAAGATGATGATTTAATTCACTTCAACAGCAGACCTCAAGTTGTTACTCTCACACAGCCACCAAGTTACGAAAATCATTTGAAAGGTGAATTTGAGAAGCTTCTTTACGCAGGCGAGCGTTTGATGAACGATTCATACGCTTATGAACGCGAAGGAGACATTCTGCGTGCGCTGCACATATGCTCAGAAGCCACAGCTGCATATCGTGAAGCCAGCCGGTTACCTGGTATTAGCAAAAGTCTTCTTGACTTTGTCGACGACCAACGTTCAAACAGTTATTTGCGCTCAAAATTATTACAAGAGAAAGCAGATAAAGTCATTAAAGGAGGAGTTACTCCCAATGCTAGCAGCATACACTCCTCCACAATTTCGTCTTCGCAACACGAAGACGTGTCAGGTTCTGTGCAATCGTACAAGACTAACGACGAAAGTGATTTACGTAATGTGCCAACATACGACAGCAAGAAGTCACCCAACATGTCATGGTATGAAAACAAACATGGATCGGTGACTTCGGCAGCAAGACAAAGCCCGCCGAATCTAATTGAATTTAGTCCGGAAAAAAGATCGTTTGATAGTCGGGAAAAGGGTACGAAAAACCTGCCACAGTACTCTCAACCACCAAACTACCGCGAATTAGAAGAAATAAAAGGCGTTATCAGTAGTTTTAACAGCGCCGCTTCTCATGTAGACGAGTCACGGAATGCGGAGAATCTAGGTACTAGTTTTCCAAGACCAACTGTGGAATGGGTTACAGATAAACCAAATAACTCTTCCCAATACAAAATTAATAAAATCACTCAGTTAAGAAACTCACAGTCGATGAAGCAACCCGTCCGACAACCGATTTTAAATGTGCAAACTTTACGTCAACCGAAGTCGTCTGGACATGATCTAAGGGAATCCATTCAACAAAACCCAAGACTGTACAATCCTTATTACATGCAAACATTACCCAACAAAATGTTATCCGCTAGATCAAAGCTTAAAAACGAAAGGGCAAGGAGCATTTACGATAACGTTGAGAGCGATACAAGTATTCAATACGACAATAGGTTAAATAATAACGAGCGTGAGTTGCGCTTTACTGATGTTTCGAAGAATAACGAAAATATGAAGAAAACGATATACGATGATAACGTATCCATACCTGCATGGTTTAAAAAAGGCACGGAGCAAACAAGAACGCGGAATTTGATAGATAGACTAAATAATGAAGAGATTCTCGATTCAGTGATTAAAAAGCCGGTTTCGGATACGCTGCAAAAAATAAAAACGCAAGGCAAGCGAATGAAGTGCATTCAATGCGGATGGAGGCTTGTTGAGGTGGAGGGGAAATGTTGTACGGCATGTCAGTCTGAATTTTTGTAA

Transcript

HSymV2.0_g06.10023_t1

AGTTATAAAAATCAATGAAAGCTGACAGATGTTGCAATGGAAATAGACACTTTTGATGATAATTTTACATTCAGTACGCCACAAGATTGGTCAAGGCGTCCAAGATTAGACAGTCGCATGTCAGTTTGCTTGCCAAGTAAAGGTTTATTTAATGCACCAGGAGAAAACAATTGCTTTTTGAATGCTAGTGTCCAGGTTTTATGGCATCTGAATGTGTTTCGAAGAAGCTTTAGGTTATTAGAGGGGCATGCTTGTTTGGAAGATGCTTGTATATTTTGTGCTCTTAAGAGAATATTTCAACAATTCCAAGACAGTGATGCAGCAGTTCTGGCTCCCGACGGATTACGTCAAGCTATGGCTAATGCATTTAGTGATGACCAGCGTTTCCAACTGGGAAGAATGGATGATGCTGCTGAATGCTTTGAGAACATATTAAACCGACTGCATAGCCACACAGCGATTGACGAACCAGACGATGCATGTGCAGCAAAACACTGCATTCCTCATCAAAAGTTTGCTCTCCATATACTTGAGCAGACTTTTTGCAAGTGTCAAGCAAGTGGTGAACCGAAGTCTTTTTATCAGTTTGTGTACTATGTTGCTGCTTCAGTTATTGTAGATCAAATGAAAAATGATGATGGTGAGAGTTTAACATTTGGGCAGGTCTTAAAATCAACAGTGTCTGGGGAATCAAGACCATGTCCGGATGAACGACGATGTTACTACAAGAACGCCCCAGATTCAATGACAACAGTACAAACAACTCTGCTTAACTGTCCCGATGTTGTGACTGTTGGTATTATATGGAACACAGACAGTCCAAGTGCGAGTTATATAACTGATGTGTTGGATTGTATTGGTCAGAGTTTGTATTTGATAGATCTGTTTGATAACATTCCTGACAATGAATACAGACGTTTAGAACTGAAGTTGGCTGGTGTTGTTTCATATTATGGTCGACATTATACTTCGTTCTTTTACAACGCAAGAGAGGAACAGTGGGTGTATTTTGACGACGCACGCGTGAAGAAGATTGGAAGTAAGTGGGAACACGTGGTCTCAAAATGTCGCCGCAATCGATTCCAACCATTGCTGGTTGTTTATACAAACTCTTCAGGTGTGCCCATCGACGCAGCTAACGCACCATCTTTAGTGGAAATCGTGTCAAAAGAAAAACTTCTGTACAAACCACAGAAGTCACCAACGCATCGTAAACAAAAACATCGTAAACATAAGAAAAACAGGTCGCGCACAAGCTCGCCCAGTTTGAGCCCCACTGATGGGGTGGAGAGATCTTTCTCCAGGAGTTCAGGTGCTTCGATGTCGCCCAGAAGTCCTAAAAAGCATAAAACGAAAAGAGAAGGACAACGCCCTGTCGAAGTAACAGACGACACTTCTGTTTTTGAAAACCACTTATCAAGTAAGATGACACGAACAGGTATTCATGGAAGCCTGTCAGACAACTCCATTGTGGATTCGACTAGAAACGGTCAGACCTTTGAATACTCAAAGACTGGTAGTTCCCTCGAAAACTCTTTCGACGAAATAGACAATTTAACTAAGAAACGGTCAGGTTCTATTAAGAAAAAGTTTAGCAATGCTATGAAGAATATAAACCCTCTGGGTAAAAAACCGATAGTTAAGAACGTTAACGCGAAACTTTCCGACAGTTACGATAAGATATCGCACTCGAACTCTCTAAACGATATATGTTATGCCGACATTGGGTTTAACTCGCCCTACCAAACGCGAAATGAACCTCAAAGTTCGGACAATGCCCCGACGAAACAACTTGAAAATCTGTCAATACATCAAGCCATGCTAAATCGTAGCAGAGATGATCTGACCAAGACTGAAAACATGTCCACCGATATGGAAAAGGACTATAAATACGTCGAAGAAAATCGAGACAAACATAATGGTTACCATGTAAACGACGTTAACAGCAGACCTGTGCAATCAGCTGATCAAGTTATAGAGAATTACCAAAAAACTGACGCAAACGATTTTCTGCAATATGAGCGAGAAAATTCTAATAGAGCGAATGCGCCAGTGAAAGATGATGATTTAATTCACTTCAACAGCAGACCTCAAGTTGTTACTCTCACACAGCCACCAAGTTACGAAAATCATTTGAAAGGTGAATTTGAGAAGCTTCTTTACGCAGGCGAGCGTTTGATGAACGATTCATACGCTTATGAACGCGAAGGAGACATTCTGCGTGCGCTGCACATATGCTCAGAAGCCACAGCTGCATATCGTGAAGCCAGCCGGTTACCTGGTATTAGCAAAAGTCTTCTTGACTTTGTCGACGACCAACGTTCAAACAGTTATTTGCGCTCAAAATTATTACAAGAGAAAGCAGATAAAGTCATTAAAGGAGGAGTTACTCCCAATGCTAGCAGCATACACTCCTCCACAATTTCGTCTTCGCAACACGAAGACGTGTCAGGTTCTGTGCAATCGTACAAGACTAACGACGAAAGTGATTTACGTAATGTGCCAACATACGACAGCAAGAAGTCACCCAACATGTCATGGTATGAAAACAAACATGGATCGGTGACTTCGGCAGCAAGACAAAGCCCGCCGAATCTAATTGAATTTAGTCCGGAAAAAAGATCGTTTGATAGTCGGGAAAAGGGTACGAAAAACCTGCCACAGTACTCTCAACCACCAAACTACCGCGAATTAGAAGAAATAAAAGGCGTTATCAGTAGTTTTAACAGCGCCGCTTCTCATGTAGACGAGTCACGGAATGCGGAGAATCTAGGTACTAGTTTTCCAAGACCAACTGTGGAATGGGTTACAGATAAACCAAATAACTCTTCCCAATACAAAATTAATAAAATCACTCAGTTAAGAAACTCACAGTCGATGAAGCAACCCGTCCGACAACCGATTTTAAATGTGCAAACTTTACGTCAACCGAAGTCGTCTGGACATGATCTAAGGGAATCCATTCAACAAAACCCAAGACTGTACAATCCTTATTACATGCAAACATTACCCAACAAAATGTTATCCGCTAGATCAAAGCTTAAAAACGAAAGGGCAAGGAGCATTTACGATAACGTTGAGAGCGATACAAGTATTCAATACGACAATAGGTTAAATAATAACGAGCGTGAGTTGCGCTTTACTGATGTTTCGAAGAATAACGAAAATATGAAGAAAACGATATACGATGATAACGTATCCATACCTGCATGGTTTAAAAAAGGCACGGAGCAAACAAGAACGCGGAATTTGATAGATAGACTAAATAATGAAGAGATTCTCGATTCAGTGATTAAAAAGCCGGTTTCGGATACGCTGCAAAAAATAAAAACGCAAGGCAAGCGAATGAAGTGCATTCAATGCGGATGGAGGCTTGTTGAGGTGGAGGGGAAATGTTGTACGGCATGTCAGTCTGAATTTTTGTAACGAAAGATTTGCATAAACATTTTCTCGATCTGGAAACAAATATTTTAGAATTTTTTTCTAGGATTTTGCACTCCCGTCAATACTCAATGTTTAGTAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IE24	Ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus norvegicus OX=10116 GN=Usp54 PE=1 SV=2
Q8BL06	Ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus OX=10090 GN=Usp54 PE=1 SV=2
Q70EL1	Ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens OX=9606 GN=USP54 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005250 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR052398 all species →	Family	Inactive ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22975 all species →	UBIQUITIN SPECIFIC PROTEINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HSymV2.0_g06.10023_t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.