Gene detail

Detailed information of HSymV2.0_g06.10315_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_6:12862153...12880042
NR annotation: XP_002168576.3, corrinoid adenosyltransferase [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HSymV2.0_g06.10315_t1

ATGTTTGCAGCTAGAGGAACAATCCGATGTATGAATATTTTGGCTGCAAATGCTATACAAAAACACACTTATCAATCAAAATATTTTGTGAAGTCTGCTCATGTATTACACTCAAGACAACTGTGTAGTGGTGGCTGGAAAATATACACTAAAACAGGTGATAAAGGGACCTCTGCTTTGTTTACTGGTGAAAGAAAATCCAAAAATGATGATGTATTTGATGCACTTGGTACTGTGGATGAGTTGTCATCGTCTTTGGGTTTGTCAAGAGAATTTTGCATTGACAATGAGCACATGGATATTGTTGAAAGGTTAGAAGAGATTCAGTGTATATTACAAGAAGTAAGTTCGAATGTTGCAACACCTGCCTCCAGTACATCTACTGCTATTAACAAAAATATAATCTTGTTTGACTCAACGTATATTCACGAATTAGAAAAATGGATTGATGAGTATCATGATAATTTACCACCGTTAAAAAACTTTATTTTACCCTCTGGTGGTAAGTGTAGTGCTTCTTTACATATTGCGCGATCGATTTGCCGAAGAACAGAACGTAAACTGGTTCCATTATTACAAAGCTCTGAACTGGATGAAAATGTTTTTAAATTTGTAAACAGACTAAGTGATTTTTTATTTACGGTTGCTCGTTATGCTGCATTCCAAGAAGAAACGAAACCAATATTAAATATGGCAGGAAAATCAAAAAAACAAAAAGTTACATCACCAACAATTAAATCTCCAAAAGCTGAAATGTCTTTAGGAACTAAAGTAGAAGCAATGGATTTTCTTGGCAACTGGTATGCTGCCAAAATTGTCCGTGTAAAATCAGATACATCACAGGTTCTTATTCACTTTGATGGTTGGAACTCCAGATTTGACGTTTGGGTGCCAAAAGACAGCAAAAAGCTGCGGCTGCCTAAACTAAACAACAAAAGCAAACTGAAAGAGAAGGAATGGCGTATTGGAGATCGAGTTATTGCCAAATGGGGGCCTGCTGGAAAGTTGTACCCAGCTACAATATCAAAAATAACGAATGAAAGTCACGTAGAAGTAACATTTTATGATGGCTTCAAAAAAGTTATCACCAAATCTTCACTAAAGGCTGATACAGAGAAACTTTACCGTCAATATCTTGAAGGCTCTCCTCGAAAGACTATTGTTGCACAACCCTTAGTACGTTCCCCTAAGGAAACCACTGATGTTTCCTTCCCAGAAACTCTTGAGCAAGGTAGATCAAAACGCCGTCTTACTGAACCAGCAGCGATGGCAGACTATGTCACAGATTTGCATTCGAAGAGACGAATGAAAAGAGGGTCTGACAGATCGACATCGGAAGATGACAAATCTAATGCAACTGGTCGAAAATTGTCTACATCATCTTTACGTTCACCAAAACATTCATTGACTGATTCAAAGGTAGAATCTCCCCAACCAACTATTCCAAAAGTGAAGTTAAAAGTCCAAAACGACTCTGTGAGTGTATGCAAGAGTGAAGATAAAGGTGTAACACCATCTAGGGTTGAGATAAAAGAAGAGTCTGTTATATCAAAAACTATAACACCATCAGGTGTAGAAATTGTAAAAAGGAAAAATAAAAGTTACATGATGTTTCCAGTATTGACTCCAGAGGAAAGTCAAAGCAAACGTGGTGCTCCTGTTGAACTTGCACCAGAGAATCAAGCTGTTATTGAAAAGGAAAGCATTACAAATGAACTCAACAAGTTGGAATTACCTCCAGATAAACCAAAGGCCAAAATGTTATCTGACCCCTCATTAAAAGTAAAGTTTCAGTTTGGTTCTAAAAACAAACAAGTGAGAGAGGTCAAGGAAGATGCTAAAGTTATGCCAACTGCTGAATCTGCTTCTTCTAACCATAAGGACGAGAAAGAGAAAGATTTAAAGTCTGAAAGCGTTTCTGTGGAAACCGAACAACATAGTGGGGATAAAGATAATTTCACCAAGGAGAAACAGGAGAGTTCTTCCCTTGTCAATGAAATGCCTTATGTGAGTAAGAGAATATCAGCCAAAAAGAAATCAATTGAAGGAGTTATAAAGAGACCTGCATTGAGTGAAGCAGTTCCAATAAAACCTGTGTTGAGTAAAAAAGCAACAGGGAAACCTGAGTCAATTGAAAATATCACAAGGAAACCTATATTGAGTGAAACTGTCACAAAGAAACCTGTGTTAAATGAAAAGGTCATAAAGAAACCTGTGTCGGGTGAAATGGTGATAAAAAAACAAGCCAAAGTGACCAAATCTACAGGATGCAAACAGAGTGTTGCACCTAAAAAGGCAAATCATGGAAAAAAATTCGAAGAGAAGTATGAAATGTTTAAATTAAAATGGAAAGAGGAGAAAGAGAAACGAAGGAAAATGTTACAAGAACAAAACAGTTCTTTCCAAGATGAAGCAGCCTCAAAGAAAGAAAAGCCTTCAGCAACACCGTTACCTGAAAAAAATAATTCAGTTAGTCCCCAAGTTGACTCAGCTACATCGAATGAAAGTGTGTTAATCAAGGGTAATAAAAATAAAGAATGCGGAGACGCTACTGAAGCCACTGTTGTTTCTTCAAAAAAAGAAATTGTAGCTACACCTGATACAGACATATCTGTCAAGCCAACAGCAGTACTACCAACTTCACCATCTATTTCAAGTTCAACAATGTCTGTTTCAAGTAAAGTGACTGGAAAACAATATCCACGAATTAAACATACCCCTCATTCACGATTTGGGAGGGTCCAAAAGCACAAGCAACGTCAGTTAAATGTAAGTTTTAAGAAAGGAGAAAAACAAGCACTGAAGAATGGCCATGCTCAATTTAAATCAGTTGTTAAAGATCCCCTGAACAAAATATCTGAAAAAAAATTGCCTGTTGTTATAGCATCTTCAGAAAGTTGCCCTAGTGTTACCAAATCTTCAGAAAGTTGTTCTGATATTGCAAAATCTTCAGAACATTGCACTGACCATAGTAAAAATGAGGTTCCTTCTTCAGAAAATGTTGACATAAAAGATCCTTTACCTGCTGTGCCCTTATCTGTGAAACCTATCAAACCTAAAGGACGACCTGTTGGTTGGCCTAAGGGAAAACCCAGAAAGAAAAAGATTGACTCTGAATTTATACCAGAAGGGTTCATCCCAGATACTAGTCGCACACCTAATGTAAGTGATACATTGTCATTCGCAAGTATGGTTTCTGAGGAAAGGCCATCACAGCGCCTGCGACCAGAACCAGTAAAATATAACTTCGACGCAAAGCAGATCAAAGTTTCCAAACCCAAGACAATAAATCAACCAGGTTTGTCAAAATCAACAGGACGCTATCTTGGACCTAATAAACTCTATTTTAATTTCATAAAGCCGCCACAGCAAAATCTTTCTGCTGCACAAATAGTTGCTGCTAAGATCCAAAAACGAGTCCACCAAAAATTATTGTATCCATCATATGTATCAGATAGTTACATGTCTACTGCTTCACCCACGTCATATCCTTTGCCTGGGTCAATTCAAGAAGAGACAGCAAGCGATGCTTTACAAGAAACAAAACAAGAGACACAGACCATAGAGCATGATTCAGATGATGCTATCATTGTAGTACAACCTTCAGAAGATGCTGAAGAAAATAAAAATTCCAAAGAGAAACAGAATAATGAATTGGATTTAACAGGTATTGAGTTAAAAGAAGGCAACAAAACATCTTTGTCTAAACTAAAACCAATTGTAAAGAAAAGAAAAAGTCTGGATTTTATTACTGGTAGACTTCAATACAAACAAAAAATGGAGACATATAAGAAAATAAACCAACAACTTCAAAAAAACTCACCTTTTGATGTTCATATTCATAATGCTGCACCTCGTCATGTTGTTTCTCCACCATACCAAGCTACACATCCTGCGAATAGCACAAGGTTATCTATTTCACCGATATCACCAGTGGTTCAACCTCCACCAGTTAATATTCAATTACCCCCAGGAATGCCAGCACACAACTTATCAACAACCTTTCAGCAAATTAATGCCACATCATGTCATATCTTGCCTAATGCTTACGTTTCATCACAAGCTCACGCAAGAATGATATCTCCTCCACTGATACATGGACCAAATGAAAATAGCAGACCTACGATACCACACTTCGCACAGAATGTTATGCAGAATGTACCACGAATTCAGCAAATTTCTCCCAACAAGAGTTCCTATCCTTCCTATTTTTTCCCTCATGGAACTGTCCAATCGATAATGCCACATTGTTCTCAACCCAATTGTCAATGTGAATTTGCCATACATCAAAGTAATATCAACCATATTCCAGTTAACCCCAATCATTCCATGGTCGCATTTACACAACAGTCTCTTTCTAATGTGATTACACCACATGTTCAAGGATCATGTCAGCCAATGAAAGCTGAACCACCAGTGTATGTTATCAACCAGCTCGGAGGGATGCAGCCGCAATCAACCAATACCATGCAACAAATATTTTCACAACAAGCTGTCCCAACGAAGACACAAACCGCCCCGATAAAAACAGATGTAAAAAGTGCTCTAACTGCTTTGTTGATAAGCAAAGACATCAAAAAAAACAAAATCAGTTCTGTCATACAACCTGCAAAAGATGTCAAGACAAACAAGAAGGAGACTCCAAAACAAATATTAAACGTCAAAAAAGAGGGAACTGTCGAAAAGACAGACGAGAATCAACTCACAAAGAAAAAGAAACGAAAAAGAGATCTATCAGACAAGGAAGAAGGTTATCAGTTTCGAAAGAAAAAGAAAGTGAAACCTGCAAAAGATAATTCTCCTGACAAGAAACTGAAAGTTGAGCAGGATGCTAAAATGTTGGCACCGAAGGAATTCAGTGTGGAATCTCCACTGGATGAGTACAAATGCTCAATCCCAGGCTGCAACAAAACCTTCAGGAAGTCGCATTTGCTTGAATATCATCACAAGTATTTTCATACTGTTGCTCCATTTACAAAAAGAAGTCGTTCCTCAATTTCCATATCATCAACTGAATCTAACCCTCCCAGTGCTCTGCCATCTCCAAATGAGCATGCTGGAAAAAGCATTAAATCAGAGGACTTAAGCAGATTGACAAGTGTTGCTAGCGAAATTGACTTACCGCCGAGTGATGTCACTGATTGCTCTGACACTGACTCAGATAGTGGTGACGAAATCACTTCTGTTGATGACTGTGTCAAGTGCGTCTGTGAAGATGAATGTGAGCTTGGATTCATGATACAGTGTGAACAATGCTTTACGTGGCAGCATGGTGAATGTGTTGGCTATTCACAGCAGAAGTCGGTTCCACTGTTCTATTTATGTCACATCTGTTCCAACCCTAAAGGTTTACGAAAATCTTCGTTTTATGATAATGATTACACATGGTACCGCCATGGGCGTTTACCTCCCACCACGCCCTCCAAAACGGAAACAGGAGAGGATAGCGCCACAAAACAAAGTAGCCATGTTAATACGGAAGACGAAGAAGTTTTGAGTAATATCATGTTAACGACCCACGGAATGGTGTCTGAGTTATTTAATATTCGTGATGTGTTACAAGGCATCAGACAGAAGTTTATCATGTGCAAAAACCCGAATCACCCGTTACTTATGGAGTGGAAAGCAGATGACGAAGCGACAACGCTACAACATATGAAAGGGAAGGATGAGAATAAAGAAGAAATAACAAAAAAAATAACAGAACATTTCGATAAAAGTTTGAGTGATATGATTAACTCGATACGACGAAAAAATAACGCAACAGACGAGTCGATAGACAGGACAAGTAATGTAAAAGAACTTACGGCAAATGATACGATTGAGAGAAACAATATAAACGTTGAATCCTCTCCGAAGAAGGGTGATGATTTTAATACAAATAATGCCAACATAGGAGACGAGATAACCGACAATGCTGTCGATAAGGGTCAGAATCACCTAACAAAAGATACTTGTAAGATGATCACAGGGAAGGATTCTAATATAACACCTGGTCTTTCGAAACAAGAGTCAAGTAAAGAAAAAGACATAAATAATAAGACAGTAAAATTGGATTCACCAAGCGACAATTCGAACCTAACTTCGACACAAAACAAACGTGTCGACGTCATAGACGATAAACAATCGTATGCCGTGGATAATATTAACGACGACGAGAGCAGCATTCCGTATATGGAAACGGACTGTGATGAATGGAATCAAACTGAAGGCGAGAACGAGAAAAAACAATATAAATCACGTGATCAAATGGAACTTGGTACAATTTTTGATGACACGTGTTTGGCAGAGGCGTCTAGAGAAAGTTTGTTGGCAAGGTATAATTTGCTTGTCGAAGTGGAACGAATTGAAGATGTAATCGCGCAACGTTTAAAAAATATGCAAGAAAAAATACAAGAATTGGAAGCTGAATACGATAGTATTGATCAATCGCAAGCGATTTTAGAACATTTTAAATCAACTTTTAAATTACCCGACATGCAAAGCTTGGTTGGGTTTCTCAACAAAGTTAAATGGACAAGTATAATAAATAAAACAGCTAAACCTTTGAAAACTCCGACGTGA

Transcript

HSymV2.0_g06.10315_t1

Protein

HSymV2.0_g06.10315_t1

MFAARGTIRCMNILAANAIQKHTYQSKYFVKSAHVLHSRQLCSGGWKIYTKTGDKGTSALFTGERKSKNDDVFDALGTVDELSSSLGLSREFCIDNEHMDIVERLEEIQCILQEVSSNVATPASSTSTAINKNIILFDSTYIHELEKWIDEYHDNLPPLKNFILPSGGKCSASLHIARSICRRTERKLVPLLQSSELDENVFKFVNRLSDFLFTVARYAAFQEETKPILNMAGKSKKQKVTSPTIKSPKAEMSLGTKVEAMDFLGNWYAAKIVRVKSDTSQVLIHFDGWNSRFDVWVPKDSKKLRLPKLNNKSKLKEKEWRIGDRVIAKWGPAGKLYPATISKITNESHVEVTFYDGFKKVITKSSLKADTEKLYRQYLEGSPRKTIVAQPLVRSPKETTDVSFPETLEQGRSKRRLTEPAAMADYVTDLHSKRRMKRGSDRSTSEDDKSNATGRKLSTSSLRSPKHSLTDSKVESPQPTIPKVKLKVQNDSVSVCKSEDKGVTPSRVEIKEESVISKTITPSGVEIVKRKNKSYMMFPVLTPEESQSKRGAPVELAPENQAVIEKESITNELNKLELPPDKPKAKMLSDPSLKVKFQFGSKNKQVREVKEDAKVMPTAESASSNHKDEKEKDLKSESVSVETEQHSGDKDNFTKEKQESSSLVNEMPYVSKRISAKKKSIEGVIKRPALSEAVPIKPVLSKKATGKPESIENITRKPILSETVTKKPVLNEKVIKKPVSGEMVIKKQAKVTKSTGCKQSVAPKKANHGKKFEEKYEMFKLKWKEEKEKRRKMLQEQNSSFQDEAASKKEKPSATPLPEKNNSVSPQVDSATSNESVLIKGNKNKECGDATEATVVSSKKEIVATPDTDISVKPTAVLPTSPSISSSTMSVSSKVTGKQYPRIKHTPHSRFGRVQKHKQRQLNVSFKKGEKQALKNGHAQFKSVVKDPLNKISEKKLPVVIASSESCPSVTKSSESCSDIAKSSEHCTDHSKNEVPSSENVDIKDPLPAVPLSVKPIKPKGRPVGWPKGKPRKKKIDSEFIPEGFIPDTSRTPNVSDTLSFASMVSEERPSQRLRPEPVKYNFDAKQIKVSKPKTINQPGLSKSTGRYLGPNKLYFNFIKPPQQNLSAAQIVAAKIQKRVHQKLLYPSYVSDSYMSTASPTSYPLPGSIQEETASDALQETKQETQTIEHDSDDAIIVVQPSEDAEENKNSKEKQNNELDLTGIELKEGNKTSLSKLKPIVKKRKSLDFITGRLQYKQKMETYKKINQQLQKNSPFDVHIHNAAPRHVVSPPYQATHPANSTRLSISPISPVVQPPPVNIQLPPGMPAHNLSTTFQQINATSCHILPNAYVSSQAHARMISPPLIHGPNENSRPTIPHFAQNVMQNVPRIQQISPNKSSYPSYFFPHGTVQSIMPHCSQPNCQCEFAIHQSNINHIPVNPNHSMVAFTQQSLSNVITPHVQGSCQPMKAEPPVYVINQLGGMQPQSTNTMQQIFSQQAVPTKTQTAPIKTDVKSALTALLISKDIKKNKISSVIQPAKDVKTNKKETPKQILNVKKEGTVEKTDENQLTKKKKRKRDLSDKEEGYQFRKKKKVKPAKDNSPDKKLKVEQDAKMLAPKEFSVESPLDEYKCSIPGCNKTFRKSHLLEYHHKYFHTVAPFTKRSRSSISISSTESNPPSALPSPNEHAGKSIKSEDLSRLTSVASEIDLPPSDVTDCSDTDSDSGDEITSVDDCVKCVCEDECELGFMIQCEQCFTWQHGECVGYSQQKSVPLFYLCHICSNPKGLRKSSFYDNDYTWYRHGRLPPTTPSKTETGEDSATKQSSHVNTEDEEVLSNIMLTTHGMVSELFNIRDVLQGIRQKFIMCKNPNHPLLMEWKADDEATTLQHMKGKDENKEEITKKITEHFDKSLSDMINSIRRKNNATDESIDRTSNVKELTANDTIERNNINVESSPKKGDDFNTNNANIGDEITDNAVDKGQNHLTKDTCKMITGKDSNITPGLSKQESSKEKDINNKTVKLDSPSDNSNLTSTQNKRVDVIDDKQSYAVDNINDDESSIPYMETDCDEWNQTEGENEKKQYKSRDQMELGTIFDDTCLAEASRESLLARYNLLVEVERIEDVIAQRLKNMQEKIQELEAEYDSIDQSQAILEHFKSTFKLPDMQSLVGFLNKVKWTSIINKTAKPLKTPT

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D273	Corrinoid adenosyltransferase MMAB OS=Mus musculus OX=10090 GN=Mmab PE=1 SV=1
Q58D49	Corrinoid adenosyltransferase MMAB OS=Bos taurus OX=9913 GN=MMAB PE=1 SV=1
Q96EY8	Corrinoid adenosyltransferase MMAB OS=Homo sapiens OX=9606 GN=MMAB PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005338 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20826 all species →	PHD_5	PhD finger domain	Domain	Interproscan
PF01923 all species →	Cob_adeno_trans	Cobalamin adenosyltransferase	Domain	Interproscan
PF06003 all species →	SMN_Tudor	Survival motor neuron protein (SMN), Tudor domain	Domain	Interproscan
PF11717 all species →	Tudor-knot	RNA binding activity-knot of a chromodomain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036451 all species →	Homologous_superfamily	Cobalamin adenosyltransferase-like superfamily	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016030 all species →	Domain	Cobalamin adenosyltransferase-like	Interproscan
IPR029499 all species →	Family	Corrinoid adenosyltransferase, PduO-type	Interproscan
IPR010304 all species →	Domain	Survival motor neuron, Tudor domain	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR025995 all species →	Domain	RNA binding activity-knot of a chromodomain	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12213 all species →	CORRINOID ADENOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008817 all species →	Molecular Function	corrinoid adenosyltransferase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HSymV2.0_g06.10315_t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.