Gene detail

Detailed information of HSymV2.0_g07.11452_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_7:3787906...3799543
NR annotation: XP_047142791.1, DNA polymerase delta subunit 2 [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HSymV2.0_g07.11452_t1

ATGACGTTCAATTTCAAGCCAGGTGGTTTTAATTTTGGTGGTACAACATCCAGTGCAGCCCCTGTTGGGGGTCAGTCAACATTTTCATTTGGTGGAGCGAATTCTACCTTGCCTGCTAACTCAACAACAGGAACGCAACCATCATTTAACTTTGCTAGTGGAAATACAGCGCCATCTGCTACTACTTCCACATTGGGTGGAACCGGATTTTCATTTAGTGCTGCATCAACTGCTGGTAGTACTGCGCAAACCATTGGTAGTAATTTTGGTTCATTAGGTGGGGCTAAACCATTCAGTTTTGGTGCAGCTACTGCCGTGACTACACAAGCAGCAGCTACAAAGCCCAACACCACTGCACCATTTGCTGGACTTAGTACAAGCAAAACAAATAATGCTCCACAGCAAAGCGGTTTTTCATTCTCAAACTCAACAACTAGTACTTCCGGTGGAATGTTTTCATCTAATCTACTAAAAGGCCAGACTACATCTGCTGCAGCAACTACGCCTTTTGCAGTAGCTTCAAGTGCAACTTCAACACCATCTTTGTCACTGGGTACTAGCACTGCTAAACAGTTCACCCTCTCCACTTCAACAACAGCAACAGCTTCGACAGGAAGCACCATTGTTTCTACTGGTGCAACGACCAACCTTGCATCAGCTGCGGCAACTCAACTCAAGCAAATGTCATACAAGGAACTTGAGGAAACAGTTGAAAAATGGCTTCATGATCTTGGAGAGCAAGAGAAAACATTTTTAAATCAAGCTTCTCAAGTTAATCTTTGGGATAGACAACTGATTGAAAATGGAGAGAAAGTGACAGAGTTGCATAATGAGGTTGAAAGAGTTAAATCTGAACAAAAGAGGCTAGATCGAGAATTAGACTTCATATTGTCTCAACAAGAAGAGTTGGAAGAGCTTTTGCAACCACTTGAAACGCAAGTAAAATCACAACAAGCATTGAAGCACTCACAACACTCTGATATAGAAAGGGAACGTACATTTAGAATGGCAGAAAACATAGATTCACAGTTAAAAACAATGATGCAGGACTTGAAAGAAATAATTGACTACATAAACAAATCTCACGTTTCACCTTCAAAAACTGATGACACTATGAGCCAAGTTGCAAAAATACTGAATGCGCATATGGACTCGCTACAGTGGATCGATCAAAATGCAAATCAGCTGCAGCAACGAATGAAGGACGGTCACCTGGAAAAATTTAGTTTCATCCAAACTGACAAAAAGAATATTATAATGACTGAATGCCATGCCCCAAGAAAATTATGCACATACCAAAATAAATCCGAAAAGTATTTATATACAAAAAAGAGAAAATTTGATTTGCAATACTCACAGTTATATGCTGTGAGATTAATCGCATTGAGAAAACGACTTCTAAACACATGCACTGAGAAATGGGGAAGTAAGTACCCTATTAAACAGCTGTCCGAGATTACCGAGAACGAAGCATGTTGTATTATTGGAACTTTATTTCGTAAAATGGAATTACAACCAAGTATATTAAAAGAAATATGTCAAGAGGAGGGCGTTTTACCCATTCCACACTCCACAAAGTATATTTCAGAGGAGGATGAACTAATTTTAGAAGAACAACAACAAAGAATTCTACTAGTTGGAAACATATCCACAATAATTTCAATAACAGGCGTTGTGGTTGCTGTTGCAGGATATCAAATACCAGGTGGTAAATTCTTCATTGAAGATACTTGTTATTGTGGAGTACCTAGTAGCACTAACATTAACATCGACCAAAGTTTATTAAATGGAGAGGACAGATACATAATTTTGCTTTCCGGGTTAGGGATTGGCAGTAAGCAGCAGAATATACTAAAACTGCAGATGTTGATTGATTTGCTGACTGGAAAACTCTCATCAGGAGAAGATCAGTTGAATCAAGCTAACATATGTCGTGTTATACTTGCTGGTAATTGTTTGAGTCGTGACACCCAAGACAAAGATTCCGAAAAAATTGCGAAATATCTCAGTCGAAACACGCAAGCGAAGAGCGTGGAAGCGATAAAATTGTTTGATGAAATGCTTGTTCAAATTGGTTCTTCGGTCCCTATTGATGTTATGCCTGGTGCACACGACCCAACAAATCAGTTCTTACCGCAGCAACCTCTACACAAGTGCATGTTCTCGAGCGTGTTGTCATATCCATATGTACAAAGTGTTACAAATCCATACGAAGCTGTCATTGGTGGAGTGAGGATACATGGAACATCTGGTCAGAATGTATCAAATATTTATCAATTTTCTGGCATGGATGACCGTCTTGACATTCTAGAAGCAACATTGAAGTGTGCTCACGTCTGCCCTACATCACCTGATACGCTAAGTTGCTATCCCTTCTATTCCGAAGACCCGTTTATCATCGATGAGTGGCCGGATATATACTTCGCAGGTAACCAACCTGATTTTCAAGCAAGAAAAACGGAAGGTGCAGACGGACAATCAGTTTTGCTGTTGTGTATCCCGTCATTTGAGGAGAGTGGTGTGTGCGTCGCTGTGAATCTTCGTGATCGTTCGTGTATTCCTATACATGTTAATGCAACTGTCAGATGA

Transcript

HSymV2.0_g07.11452_t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O93610	DNA polymerase delta subunit 2 OS=Xenopus laevis OX=8355 GN=pold2 PE=2 SV=1
P49004	DNA polymerase delta subunit 2 OS=Bos taurus OX=9913 GN=POLD2 PE=1 SV=2
Q6AXY4	DNA polymerase delta subunit 2 OS=Rattus norvegicus OX=10116 GN=Pold2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04042 all species →	DNA_pol_E_B	DNA polymerase alpha/epsilon subunit B	Family	Interproscan
PF05064 all species →	Nsp1_C	Nsp1-like C-terminal region	Family	Interproscan
PF18018 all species →	DNA_pol_D_N	DNA polymerase delta subunit OB-fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007185 all species →	Domain	DNA polymerase alpha/delta/epsilon, subunit B	Interproscan
IPR024826 all species →	Family	DNA polymerase delta/II small subunit family	Interproscan
IPR007758 all species →	Domain	Nucleoporin, NSP1-like, C-terminal	Interproscan
IPR040663 all species →	Domain	DNA polymerase delta subunit, OB-fold domain	Interproscan
IPR041863 all species →	Domain	DNA polymerase delta subunit 2, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10416 all species →	DNA POLYMERASE DELTA SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006271 all species →	Biological Process	DNA strand elongation involved in DNA replication	Interproscan
GO:0042575 all species →	Cellular Component	DNA polymerase complex	Interproscan
GO:0043625 all species →	Cellular Component	delta DNA polymerase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02328	POLD2; DNA polymerase delta subunit 2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.