Gene detail

Detailed information of HSymV2.0_g07.11582_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_7:5207865...5218141
NR annotation: KAJ8020653.1, DnaJ-like subfamily C member 27 [Holothuria leucospilota]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

HSymV2.0_g07.11582_t1

ATGTATCAATTTTTTTTGCACAAAGAAAATGCATAAACTGGCTCACTCATGTACACTTTGCTTTGTTTACATATAATGGCGGCATTGACGGAGTAATCGGCTCTCTGCTAGGTAGCAAATTTTGTTGATCGTTTGAATTGATACTTAGGGTAAAGAAATATTGTTAATTCTTCTGTAGCAACGGAAATTTGAAATCGTTTGCCATGAGCAAGAAGCACAAAAAATCATCACGTGTTAAAGTAGTAAGTTTAGGTAGCACTGAATCAGGAAAATCATGTGTCATAAAAAGATATTGTGAAAAAAGGTTTGTTACCAAATATATGCCAACTGTTGGTGTTGACTTTGGAGTAACGAAAGTTGTTGTTGATGACCTGGAGCTGAAAGTTAATTTATTTGATTTATCTGGACATCCAGCTTTTAAAGAGGTGAGAAACGAGTTCTACAAAGACACTCAAGGCGTCTTGCTAGTTTATGATGTTACTAACAAGGCATCATTTGAAGCTCTTGATAGTTGGTTTAAAGAAGTTAAACAGTATATCCCTGATCCGATTGACATAAGTCGTATTGTGTTTATCTTATGTGCAAATAAGATTGACAAAAAGAACTCTAGGACTGTTGATTTTGTGAAAGGCCGTGAGTGGGCACAAAAACATGGATTTTATTACTTTGAAACGTCATCACAAACAGGAGATGGGATAAATGAAGCCTTTGAAATGTTGTTTAAAGGACTCACTCAAGTCATTGAAACTGGAGAAAGACCAAAAAATGTTGCTGCTACTTTAGGTTATACTAAGGAACAGATGGATGCCATTCAAAAATTAAAAACATGTAAAGATAATTACAGCCGACTTGGACTTTCCTATGGCGCTTCACAAGAAGATGTCAGTAAAAGTTATCGCAAGCTTGCAAAACTGTTACATCCTGATAAATGTGAAATTCCAGACAGCGAGGATGCTTTTAAAATACTTGTAGCAGCTCGAGACGCTTTGATTAATAATGGGAAATAATAATTTAAAATTTAAAAGATATTTAAATTTGTAATTGGCTTGTTTTCCAAATGGAGTGTTTTTAAATTTTTTTTTATAACAAATAGTCTTTATTTTTAAACTTTTATGGTTATGTTAATTTGCTGAAACAAAACATCTTCCAGAACTACTGATGAAATTTTGTTGGTGATTGTGCTGCTAATTTGTTTTTTGTTGTAATGAAAAAGATTTCTGTGAAAAAAAAATCAGATTTTTAAAATTGTGGTTTTCTATTATTACAGTAGAAATCCAGCTCAGTATAGGGACATCATACTTTTGTTAATAATATAAATGTACAAATATTCATATATTTAAAACTCTTTTAGGATCAATCTTCCCTTTTTCCTGTCATATGCTTTTGTGTTTAGAATTTGCTATAATCCTAATATATTCCCCTGCAAATCGTTATTTATATATATTTTTACACAGTAGTTTCATGGTAAAAGTTGTATTTGTAGATTATTTTGAATGTTGTATATTATAAATTATTTTCAGTTGTATATTCTTTTAAAAACATGTTGGGGCTGGCATTGTATTTTCTTCCATGTTTCTCTTAATCATTGTATAAAGTCGTAAGATTAAAATTAAACTCAAAAAGGTAACATGGGGCCAGGAAAGCTTGATTAACTATGCTGATTGAAaaagctgattatgtggttacgtaaatacttgaccacacaatcagcttttttaagcaaggttgtagattttatactcagtgaaatcctgctgtttttcatcattttccattctaatattttaaaaatagagcactcttcgtcagtttctccattataatgttttttatttgaatcatttcttcgaatttatgttgtatttttgttgtttatggtacacactcaacgttttggttatatttcatgttttagtaaaaaataaacgaaatttaaaactgCAATCGAGGAGATCCTTTTGGACAATGTTGTTAGAGGCTTAGTCTAGCTTTTGTCTTTAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IMK3	DnaJ homolog subfamily C member 27 OS=Danio rerio OX=7955 GN=dnajc27 PE=2 SV=1
Q6IML7	DnaJ homolog subfamily C member 27 OS=Rattus norvegicus OX=10116 GN=Dnajc27 PE=2 SV=1
Q8CFP6	DnaJ homolog subfamily C member 27 OS=Mus musculus OX=10090 GN=Dnajc27 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005554 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR050227 all species →	Family	Ras-related protein Rab	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977 all species →	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0031985 all species →	Cellular Component	Golgi cisterna	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19372	DNAJC27; DnaJ homolog subfamily C member 27	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.