Gene detail

Detailed information of HSymV2.0_g08.13409_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_8:8935839...8957649
NR annotation: NP_001267868.1, carbamoyl-phosphate synthetase/aspartate transcarbamoylase/dihydroorotase [Hydra vulgaris]
Species Hydractinia symbiolongicarpus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HSymV2.0_g08.13409_t1

ATGCCAAATTTTTTTGAGTCTGAGCGAATTTGGACTAATGGTTTAATTGTTGGTGACTTGACCGAAGATTACAGTCATTGGTGTGCAGACCAGTCACTTTCTTCTTGGCTGAAGTCTCATAAAATACCTGGAATTTATGATATTGACACCAGAGCTTTGACAATAAAGATAAGGCAAAAAGGCACAATGTTAGGAAAGATTGTGGTTGATGGGGATAATGCTGATCAGATTCCATTAGAAGATCCAAATAAAAGAAACCTTGTTGCTGAAGTTTCTTCAAAGAAATCAAAGGTTTATAATGAAGGAGGAAAGTTTAAAGTAATCGCTATCGACCTTGGCATAAAATACAACCAAATACGATGTCTCATTGAATGTGACTGTCAAGTTATTGTTGTTCCTTGGAATTTTGACTTTTTGGAGCTGCTCAAAAACAAAGAATATGATGCCGTCTTTCTTAGCAATGGTCCTGGTGATCCCACTATGTGTCAAGTTACTGTTGATAATGTGAAGAAGTTACTGCAAGAGTTTCCAGATGTCCCTATCTTTGGAATATGTATGGGTCATCAGTTGTTATCACTTGCTGCTGGTTGCAAATCTTACAAGATGAAATATGGCAATCGGGGTCATAATCAGCCATGTGTTCATGAAGATACTGGAAGATGTTTCATAACTTGTCAAAACCACGGTTTCGCCATTGACCCAAAGACAATACCATCAGAGTGGTCAGTTCTGTTTACAAATGCAAATGATAACAGCAATGAAGGAATTGTTCACAAGACGAAACCTTGCTTTTCTGTACAATTCCACCCTGAGCATCAAGGTGGTCCCCGAGATTTAGAACTTCTGTTTTCATTTTTCATCAACATTGTAAGGCAAGTTAAAGATGGTAAAAAACCACACTTGAGAGATTTACTGACTGAAGAAATCAAGTATGAACCTAAACATGGGTTAGAGACAAAAGCATTTACTCCAAAGAAAGTGATCATTCTTGGCTCAGGTGGCCTATCAATTGGTCAAGCAGGCGAATTTGATTATTCAGGCTCACAAGCAATAAAAGCTTTAAAAGAAGAGCACATACATACAGTGTTGGTCAATCCCAACATTGCAACAGTACAAACTTCAAAAGGACTTGCAGACAAAGTTTATTTTTTGCCAGTGACATTTGAATATGTCAGTAAGGTAATAGAGGCAGAAAGACCAGATGGAATACTTCTTTCATTTGGTGGCCAAACAGCCTTAAATTGTGGTCTTAAGTTAAAAGAGCGAGGAGTTTTGGAGCAGTTTGAGGTGTCCGTACTTGGAACTCCAGTGAAGTCAATTGAATGGACTGAGGATAGAAAAATGTTTTCAGAAAAAATGGAAGAAATACATGAGCATGTTGCACCAAGTGAAGTAGCTTACAATGTTAAACAGGCTTTAGATGCTGCTAACAATTTAGGATATCCTGTTCTTTTAAGAGCTGCTTTTGCATTGGGGGGATTGGGTTCTGGTTTTGCGTCAAACGATGAGGAACTTATAAAGTTAGCAACTACTGCTTTTGCACACTCAAGACAAGTTCTTGTTGACAAATCTCTGAAAGGTTGGAAAGAAATTGAATATGAAGTTGTTAGGGATGCTTATGATAATTGTATTACAGTTTGTAATATGGAAAACTTTGACCCGCTTGGTATTCATACAGGAGAATCCATTGTTATTGCGCCAAGTCAAACCCTAACCAACGAAGAATACAATATGCTACGACGAACAGCAATTAAAGTTATTAGACATCTCGGTGTAGTTGGCGAATGTAATATTCAATATGCTTTAAACCCACTTTCTAAAGAGTATTTCATTATTGAGGTTAATGCTCGACTTTCAAGAAGTTCAGCTCTGGCATCCAAGGCTACAGGCTATCCTCTGGCATATGTTGCTGCCAAACTTGCACTTGGGATTCCTTTGCCAAAATTAAAGAATTCTGTAACAAATTCTACAACGGCTTGTTTTGAACCATCTCTTGATTACTGTGTTGTGAAAGTACCACGTTGGGATTTGGCAAAGTTTCAGAGAGTTTGTACAAAGATTGGATCATCCATGAAAAGCGTTGGTGAAGTAATGGCTATTGGCAGGTCTTTTGAAGAAGCTATTCAGAAGGCTCTTCGAATGGTTGATGAGTATAATCTTGGATTTGATGCACATGACTATATCTTAAACGATATTGAACTACAAGAGCCGTCTGACAAACGTATCTTCTACTTGGCTAGTGCGTTAAAGGCTGGGTATAGTGTTGAGCAGTTGTATGACCTTACTAAAATTGATCATTGGTTTCTTTACAAACTTCAAAAAATATCTCAGTTTGGAAAGATGTTGGAAAAAGAATTTACGGAAGATGAAAATATTCCTCCTAAAGTTTTATTAAAAGCCAAGAAAATGGGATTTTCAGACAAACAAATAGCAAAGCATGTACAAAGCACTGAGCTAGCCATTCGCATGCTTCGACTTGAATCAAACATTTTACCTTCTGTTAAGAAAATTGATACTGTTGCTGCAGAATTTCCAGCTGAGGCAAACTACTTATACCTAACCTACAATGGTGTTACTGATGATGTTAAGTTTGGAAACGGAGGAAATGAAATAATGGTGATAGGTTCTGGTGTATATAGAATAGGAAGCAGTGTTGAATTTGACTCGTGTGCCGTTGGTTGCATCCGTGAACTTAAAAAGCTCGGAAAGAAAACTATCATGGTGAATTTTAATCCTGAGACTGTTAGTACAGATTACGATGAGTGTGATAGATTATATTTTGATGAAATTTCATTTGAGACTGTTATGGACATTTACTGCAAAGAAAACCCAGAAGGAGTTATCTTATCTATGGGAGGACAAGTTGCAAATAACATTGCTATGGCTTTACATCGACAGGAGGTCAATGTACTTGGAACCTCACCAGAAATGATTGACACAGCAGAAAATCGTTTCAAGTTCTCACGTATGCTTGATGGAATTGGTGTGTTGCAACCAGTTTGGAAAGAATTAACAACAATGGAAGAAGCATTCATGTTCTGCTCAAATGTTGGATTTCCTGTACTCGTTCGTCCTTCATATGTTTTGAGCGGTGCAGCAATGAATGTTGCATTTGGTGAAAATGATTTGGAAGCTTACCTCGGATCAGCTGCTGCAGTTTCTAAGGAACACCCTGTTGTTATCTCAAAATTCATAATTGACGCAAAAGAAATAGATGTTGATGCTGTAGCAGCAGATGGCGAAGTTTTGGCAATAGCTGTCTCAGAACATGTAGAAAATGCAGGTGTTCATTCGGGTGATGCAACCATGATCTGCCCACCACAAAATCTTAACGATGAAACATTAATGAAGATCAAGCAGATCTGTTTAGAAGTTGGAAGGTCTCTAAATGTGTCCGGTCCTTTTAATATGCAACTTATTGCTAAGGATAATGAATTAAAAGTGATTGAATGTAATTTAAGAGTTTCAAGATCATTTCCCTTTGTGTCAAAAACTCTTGATTTTGACATGGTTGCTATGGCAACGAAAGTTATTATTGGAAAAACAGTGGAACCCTCGATAGGAATCATGAGCAAATGTAAAAAAGTTGGATGTAAGGTTCCCCAATTTTCGTTTGCAAGACTTGCTGGTGCAGATTTTGAGTTGGGTGTGGAAATGGCCAGTACTGGTGAAGTTGCATGTTTCGGTGAAAATAAGTATGAAGCTTATTTAAAAGCAATGATTAGTACTGGCTTCAAATTGCCAAAAAAAACCATTCTTCTTACGGTTGGAAGTTACAAGGCGAAGAATGAAATGTTGTCAAGTGTCAAGTTATTGGAAGAAATGGGTTATGAATTGTACGCTAGCATGGGAACTGGTGATTTTTATCAAGAGCATGGGATTAAGATACAAGTTATTGATTGGCCATTTGAAGAAAATGGTATGGAAGGTCAAGAAGAAAGTATCCAAGAGTACTTGTCACAAAATAAATTTGATTTGGTTATTAACATACCAATGAGACAAACTAGTACGAAAAAGAAATCTCATTTTGTTACGCATGGTTACAGAACTCGCAGACTGGCTATTGATCATGCTGTCCCACTGATTACTAATATAAAATGTGCAAGACTTTTTTGTGAGGCTTTATATCGTATTGGTAAGAAAGTGGAAGTAAAGACTCACATTGATTGTGTTACTGCTGGAAATATAATACGTCTTCCTGGTCTAATTGATGTGCATGTTCACATGAGAGAACCTGGTGCAGTTCACAAAGAAGATTTTCAGTCAGGTACAGCTGCTGCTTTGGCTGGTGGTATTACAATGGTTCTGTGTATGCCAAACACAAAACCTGCAATTACGGATGCAGCTGCTTTTGAATTGGCTAAAAAGATTGCAGATAAAAATTCAAGATGTGATTTTGCATTGTACGCTGGTGCATCAACAGATAATGCAATTGAAATTTCAAAGTTAGCACCTTCATGTGCTGGTTTAAAGATGTACTTGAATGACACCTTCACTACTTTAAAGATGGATAACTTAACAGATTGGATGAAACATTTTGAAGCATGGCCAAAGCATCTTCCTATTGTGTGTCATGCTGAAAGCCAAACAACTGCTGCGGTGTTGCTAGTGGCAGAAATTTATGGCAGACCAGTTCACATTGCACATGTAGCCAGAAAAGAAGAGATCTCAATTATTAAAGCTGCTAAAAAGAAAGGTTTGCAAGTGACATGTGAAGTTGCACCACATCATTTGTTTTTAACTATTGATGATTACCCAAACATTGGCGAATTGAGAGGTCGAGTAAAACCACCACTTTGTACCAAGGAAGATCAAAAAGCATTGTGGGATAACCTTGACATAATTGATTGTTTTGCTACAGATCATGCACCCCATCATGTAGATGAAAAAGATTCTAAGAATCCTCCACCAGGATTTCCTGGCTTGGAAACAATGTTGCCACTGTTATTAACAGCAGTCAGTGAAGGTCGATTGACAATTGATGATATCGTGTTGCGACTTAATACAAATCCAAGACGTATTTTTGGTTTGCCTGAGCAGCAAAATACTTATGTCGAAGTTGACATGTCAGAAGAATGGATTATTCCTGATGCTTTATCATACACTAAATCCAAATGGACCCCTTTTGCTGGAATGAAAGTTCAAGGGAAAGTTTGTCGAGTTGTACTAAGGGGTCAACTTGCAGTTATCGAAGATCAGGTCTTGATGAAACCTGGTTTTGGTGAAGATATTCGTTCTTGGGAACCACCTCATTGCTTGCCACCAGTAACTGTTCTTGAACAAAAAATATCCAGTATAACCAAAAAGGATACACAGTCTTCACTCCTTAATGTTCCAACACTTCATGAAACACTGCGAAAGAAAGATTCAAATGAAGATACTCCTGCCAGCCCAGGTGGCAAAGCTGGTTCTGCTCCATCCTTCTCCTTGCCAGCAACACCACAAAAAGCGTTAGAAGATGTTTTTCAAGATACACCACACATAAGTGTACCCACTCTTGTCATGCAACAACTCCCTCCTTCATTGCAATCACATGCTTTGTATGGAAAACATATTCTGTCTGTGGAAACACTAAGCAAAGACCATCTGGGTTCCTTGTTTAACCTTGCTCACTACATGCGACAGGAAGTGCGGAAGGGAAAGATATTCGAAACTTTAAAGGGTAAAGTTCTTGGTTTAATGTTTTTTGAAGCCAGTACAAGAACTTCAGGTTCATTTCAAATAGCCATGCAAAGGTTGGGAGGAACTGTGTTCTGTATTAATCCATCAGATTCATCTTTAAAGAAGGGAGAATCATTAGAAGACACTGTGCATACGATGAGCTGCTACTGTGACGCTATTGTTCTGCGTCATCCAGAGAAAGGCGCTGTCCAGCGTGCTGCCGAGCACTGTCGTCGCCCGATTATAAACGCTGGAGATGGGGTAGGGGAACACCCTACGCAAGCTCTACTTGATGTTTTTACAATCCGGGAAGAAATTGGAACTGTGAATGGAATTACTGTCACAATGGTGGGCGATTTGAAGCATGGTAGAACAGTACATTCTCTCGCTAGACTACTAACTCTCTACAGAGTCAATTTGCAATACGTTTCACCAAACTCGTTAAAAATGCCAGAAAATGTGAAAGCCTATGTAGAACGCAGAGGGATTCCACAGAAAGAGTATCCAACGATCGAGGATGCTTTACCCTCCACCGATGTTCTCTATATGACGCGCATACAAAAGGAACGATTTTCCACTGAAGCTGAGTATGAGGAGGTACATGGGTGTTACATAGTAACACCGAAACTTTTAACAAAAGCCAAAGAAAAAATGGTGGTTATGCATCCTTTACCCCGAGTAAATGAAATCAGCATTGAGGTAGATTCTGATCCACGAGCTGCTTATTTTCGCCAGATGGAATGTGGGATGTATGTTCGTATGGCGCTGCTAGCTTTGTTGACTGGTCGCTGTTGA

Transcript

HSymV2.0_g08.13409_t1

Protein

HSymV2.0_g08.13409_t1

MPNFFESERIWTNGLIVGDLTEDYSHWCADQSLSSWLKSHKIPGIYDIDTRALTIKIRQKGTMLGKIVVDGDNADQIPLEDPNKRNLVAEVSSKKSKVYNEGGKFKVIAIDLGIKYNQIRCLIECDCQVIVVPWNFDFLELLKNKEYDAVFLSNGPGDPTMCQVTVDNVKKLLQEFPDVPIFGICMGHQLLSLAAGCKSYKMKYGNRGHNQPCVHEDTGRCFITCQNHGFAIDPKTIPSEWSVLFTNANDNSNEGIVHKTKPCFSVQFHPEHQGGPRDLELLFSFFINIVRQVKDGKKPHLRDLLTEEIKYEPKHGLETKAFTPKKVIILGSGGLSIGQAGEFDYSGSQAIKALKEEHIHTVLVNPNIATVQTSKGLADKVYFLPVTFEYVSKVIEAERPDGILLSFGGQTALNCGLKLKERGVLEQFEVSVLGTPVKSIEWTEDRKMFSEKMEEIHEHVAPSEVAYNVKQALDAANNLGYPVLLRAAFALGGLGSGFASNDEELIKLATTAFAHSRQVLVDKSLKGWKEIEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNEEYNMLRRTAIKVIRHLGVVGECNIQYALNPLSKEYFIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPKLKNSVTNSTTACFEPSLDYCVVKVPRWDLAKFQRVCTKIGSSMKSVGEVMAIGRSFEEAIQKALRMVDEYNLGFDAHDYILNDIELQEPSDKRIFYLASALKAGYSVEQLYDLTKIDHWFLYKLQKISQFGKMLEKEFTEDENIPPKVLLKAKKMGFSDKQIAKHVQSTELAIRMLRLESNILPSVKKIDTVAAEFPAEANYLYLTYNGVTDDVKFGNGGNEIMVIGSGVYRIGSSVEFDSCAVGCIRELKKLGKKTIMVNFNPETVSTDYDECDRLYFDEISFETVMDIYCKENPEGVILSMGGQVANNIAMALHRQEVNVLGTSPEMIDTAENRFKFSRMLDGIGVLQPVWKELTTMEEAFMFCSNVGFPVLVRPSYVLSGAAMNVAFGENDLEAYLGSAAAVSKEHPVVISKFIIDAKEIDVDAVAADGEVLAIAVSEHVENAGVHSGDATMICPPQNLNDETLMKIKQICLEVGRSLNVSGPFNMQLIAKDNELKVIECNLRVSRSFPFVSKTLDFDMVAMATKVIIGKTVEPSIGIMSKCKKVGCKVPQFSFARLAGADFELGVEMASTGEVACFGENKYEAYLKAMISTGFKLPKKTILLTVGSYKAKNEMLSSVKLLEEMGYELYASMGTGDFYQEHGIKIQVIDWPFEENGMEGQEESIQEYLSQNKFDLVINIPMRQTSTKKKSHFVTHGYRTRRLAIDHAVPLITNIKCARLFCEALYRIGKKVEVKTHIDCVTAGNIIRLPGLIDVHVHMREPGAVHKEDFQSGTAAALAGGITMVLCMPNTKPAITDAAAFELAKKIADKNSRCDFALYAGASTDNAIEISKLAPSCAGLKMYLNDTFTTLKMDNLTDWMKHFEAWPKHLPIVCHAESQTTAAVLLVAEIYGRPVHIAHVARKEEISIIKAAKKKGLQVTCEVAPHHLFLTIDDYPNIGELRGRVKPPLCTKEDQKALWDNLDIIDCFATDHAPHHVDEKDSKNPPPGFPGLETMLPLLLTAVSEGRLTIDDIVLRLNTNPRRIFGLPEQQNTYVEVDMSEEWIIPDALSYTKSKWTPFAGMKVQGKVCRVVLRGQLAVIEDQVLMKPGFGEDIRSWEPPHCLPPVTVLEQKISSITKKDTQSSLLNVPTLHETLRKKDSNEDTPASPGGKAGSAPSFSLPATPQKALEDVFQDTPHISVPTLVMQQLPPSLQSHALYGKHILSVETLSKDHLGSLFNLAHYMRQEVRKGKIFETLKGKVLGLMFFEASTRTSGSFQIAMQRLGGTVFCINPSDSSLKKGESLEDTVHTMSCYCDAIVLRHPEKGAVQRAAEHCRRPIINAGDGVGEHPTQALLDVFTIREEIGTVNGITVTMVGDLKHGRTVHSLARLLTLYRVNLQYVSPNSLKMPENVKAYVERRGIPQKEYPTIEDALPSTDVLYMTRIQKERFSTEAEYEEVHGCYIVTPKLLTKAKEKMVVMHPLPRVNEISIEVDSDPRAAYFRQMECGMYVRMALLALLTGRC

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91437	Multifunctional protein CAD OS=Squalus acanthias OX=7797 GN=CAD PE=2 SV=1
P27708	Multifunctional protein CAD OS=Homo sapiens OX=9606 GN=CAD PE=1 SV=3
B2RQC6	Multifunctional protein CAD OS=Mus musculus OX=10090 GN=Cad PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001105 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF02729 all species →	OTCace_N	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain	Domain	Interproscan
PF02787 all species →	CPSase_L_D3	Carbamoyl-phosphate synthetase large chain, oligomerisation domain	Domain	Interproscan
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan
PF00117 all species →	GATase	Glutamine amidotransferase class-I	Domain	Interproscan
PF00185 all species →	OTCace	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	Domain	Interproscan
PF02142 all species →	MGS	MGS-like domain	Domain	Interproscan
PF00988 all species →	CPSase_sm_chain	Carbamoyl-phosphate synthase small chain, CPSase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002474 all species →	Domain	Carbamoyl-phosphate synthase small subunit, N-terminal domain	Interproscan
IPR036901 all species →	Homologous_superfamily	Aspartate/ornithine carbamoyltransferase superfamily	Interproscan
IPR002082 all species →	Family	Aspartate carbamoyltransferase	Interproscan
IPR005480 all species →	Domain	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR036897 all species →	Homologous_superfamily	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR036480 all species →	Homologous_superfamily	Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR006132 all species →	Domain	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR005483 all species →	Domain	Carbamoyl-phosphate synthase large subunit, CPSase domain	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR006275 all species →	Family	Carbamoyl-phosphate synthase, large subunit	Interproscan
IPR017926 all species →	Domain	Glutamine amidotransferase	Interproscan
IPR006130 all species →	Family	Aspartate/ornithine carbamoyltransferase	Interproscan
IPR006131 all species →	Domain	Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain	Interproscan
IPR035686 all species →	Domain	Carbamoyl-phosphate synthase small subunit, GATase1 domain	Interproscan
IPR036914 all species →	Homologous_superfamily	Methylglyoxal synthase-like domain superfamily	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR011607 all species →	Domain	Methylglyoxal synthase-like domain	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR002195 all species →	Conserved_site	Dihydroorotase, conserved site	Interproscan
IPR006274 all species →	Family	Carbamoyl-phosphate synthase, small subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11405 all species →	CARBAMOYLTRANSFERASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0016597 all species →	Molecular Function	amino acid binding	Interproscan
GO:0016743 all species →	Molecular Function	carboxyl- or carbamoyltransferase activity	Interproscan
GO:0004070 all species →	Molecular Function	aspartate carbamoyltransferase activity	Interproscan
GO:0006207 all species →	Biological Process	'de novo' pyrimidine nucleobase biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0004088 all species →	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0004151 all species →	Molecular Function	dihydroorotase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006228 all species →	Biological Process	UTP biosynthetic process	Interproscan
GO:0006541 all species →	Biological Process	glutamine metabolic process	Interproscan
GO:0019240 all species →	Biological Process	citrulline biosynthetic process	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0016812 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11540	CAD; carbamoyl-phosphate synthase / aspartate carbamoyltransferase / dihydroorotase	EC:6.3.5.5 EC:2.1.3.2 EC:3.5.2.3	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of HSymV2.0_g08.13409_t1 across 44 RNA-seq samples of Hydractinia symbiolongicarpus. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

44Samples

44TPM > 0

3Conditions

145.2Max TPM

90.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Whole embryo	36	36	86.46	139.34
Whole embryo · Triptolide 20 uM	4	4	117.22	145.23
Whole embryo · DMSO 0.5%	4	4	104.05	142.11

Per sample · hover a bar for the full sample record

Show the sample table (44 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR24482133	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	139.34
SRR24482153	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	136.24
SRR24482141	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	125.87
SRR24482145	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	123.44
SRR24482138	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	122.68
SRR24482134	Whole embryo	Whole embryo	5 hpf	not recorded	SRP436676	121.92
SRR24482139	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	121.43
SRR24482140	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	121.26
SRR24482143	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	120.21
SRR24482144	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	119.43
SRR24482142	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	115.85
SRR24482136	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	115.74
SRR24482177	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	111.71
SRR24482135	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	110.23
SRR24482137	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	109.90
SRR24482174	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	96.73
SRR24482167	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	96.63
SRR24482171	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	96.16
SRR24482175	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	92.58
SRR24482165	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	90.46
SRR24482173	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	89.95
SRR24482169	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	88.78
SRR24482170	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	86.62
SRR24482161	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	85.93
SRR24482172	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	84.33
SRR24482168	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	75.92
SRR24482176	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	71.48
SRR24482166	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	66.10
SRR24482163	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	64.17
SRR24482162	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	62.65
SRR24482157	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	13.50
SRR24482160	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	8.41
SRR24482156	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	7.58
SRR24482159	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	7.18
SRR24482158	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	6.49
SRR24482155	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	5.76
SRR24482150	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	145.23
SRR24482149	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	142.87
SRR24482147	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	96.47
SRR24482146	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	84.31
SRR24482151	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	142.11
SRR24482152	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	135.88
SRR24482154	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	74.03
SRR24482148	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	64.18

Source: CnidoSite RNA-seq expression matrices (HSYMB_TPM, StringTie quantification over 44 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Hydractinia symbiolongicarpus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

Direction	Partners	Most correlated partner	PCC
Positively correlated	38	HSymV2.0_g10.19211_t1	0.974110508741105
Negatively correlated	9	HSymV2.0_g03.04525_t1	-0.940609168054129

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Hydractinia symbiolongicarpus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	ready	open →
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →