Gene detail

Detailed information of HSymV2.0_g08.14155_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_8:21088772...21102081
NR annotation: XP_012556392.1, protein transport protein Sec24D [Hydra vulgaris]
Species Hydractinia symbiolongicarpus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HSymV2.0_g08.14155_t1

ATGAATAGGCCACCACAGTCATTTCATGCAAATCAACAGAATCAACAACCGTTTTTAAATAATCCTCCTCCTGGTCAAATGATTGCTGGAGGTCCTCCATCGCAAGGTCATAACAGATATGCTCCTCCGAATCTACAGCATCCACAACAAATAAGGAAGGAACCTCCTGGTCAAGGAGTTAGACCACCATTTTCAGGACCGACTACTAATGGAATCCCAACTCACAATGGCAATACATCTCCACCTAATTCCTTGATGTCAACGCAACAGCAGATGATGCCGCCAATGAGTAATGTAACACAACAGATGAGTGGTATGCAGTTGAATCCTACGCAGCCTCCACAAAGTGCATTTTCACCTTATCGACCAACAGGACCCCCAGCCCAACAGAGACATACAGGTCCCCCTGCAAATAGAGGACAGCCACCACAGATGCAACCTCGACCATCTAGTCAACTATACAACCAACACAGAATGGTACGTCCAGGAGTACCACCTCAATCTGGTCCACCGTCAGGTCCACCTTCACTTGGTGCCCCAGCTGGATTATCTGGACCTTCATCTTTAAGTGGACCATCGTCTTTAAGTGGTCCAATAGGGACAGGACCACCACCCTTAACAAGACCACCTGGTCCTGGTTCTGGACCCACAAAGCCTATGTACCCTGAACAGAATATCCTACAGCAGCCATCCAACAGCCAACCTGGTTTTATGAATCCACATGGAATGCAAAAACAGCGCTCTAATATGACGGGGCCACCATCAGGAATGATGCCAGGAGGCCCACCTATAGGACAGGTTCAACCAGGAATGGCACCACCCCAAATGGGACAACCCCAAATAGGACAATCACAACCTGGGATGAAACATCCAGGAATGGGACAACCAGGAATGGGACAACCAGGAATGGGACAACCAGGAATGCCTCAGTTTTCACAGCCAATGAGTGCTCCTCACAATATGAGTGGAGGTCCAATTAGCCGTCAACCACCACCTATGAGTGGACCAGGAATGACAGGTCCAATGGGTGCTCCTCAACAAAAAAGAATTGATCCTAACCAAATGCCAAATCCAATCCAAGTTATGAATGATGATCAAGCAAGTTTTGATGGGGAAATATTTACAACAAGTACACGTGGGAAGGTTCCTCCTCTTGTGAGTACTAAATGCAGGATACAAGATGACGGTAATTGTAGTCCACGTTACATGCGATCATCTGTGTACTCAATCCCATGCAATCAAGATATGTTAAAAGAAAGTGGCGTACCCATGGCTATAGTTTGTACACCTTTTGCAAGAATACCAGAAGATGAACATCAGTTACGATATGTAGATCATGGACCAAGTGGTCCTGTGCGATGTAACCGATGCAAAGCATATATGAATCCATTTATGCAATTCATTGATGGTGGGAGGAGATTTGTATGCAATATCTGCAGCCACTCTTCAGAAGTGCCACCAGAATACTTCTGTCATCTTGATCACCAGGGGAGGAGAGTAGATATGTATGAGAGACCAGAATTATGTTTCGGTTCTTACGAATTTATAGCTACTACAGACTATTGTAAGGACAGTAAAATGCCAGAGCCTCCAGCTTTCATCTTCATGATAGATGTATCATACCAAAGCGTGCAACAAGGGATGGTTAAAATACTATCAAATGAGCTCCACACGTTATTGGATAGTTTGCCAAGGGATGTTGGAATGGGAGAGAGTTTGATCAAAGTCGGTTTCGTCACTTACAGCACTCAGCTTCATTTTTACAATGTTAAAGCAAACTTGGCTCAACCACAGATGATGGTCGTTACAGATTTAGAAGATGCTTTTGTCCCACTTTTAGATGGTTTTCTAGTAAATTATAAAGAAGCGAAAGCTGttgttgacagTTTGTTGGATATGCTTCCTGAAATGTTTAAAGACACAAGAGAAACAGACGTTGTGTTAGGACCAGTTGTTGCAGCTGGTTTGGAAGCCCTAAAGAGTGCTGGCATTTCTGGTAAGCTCTTCATATTCCATTCGTCCTTACCTATCGCAGAAGGACCAGGAAAATTGAAGAATAGAGAAGATAGAAAATTGTTGAACACTGAGAAAGAAAAGACGATTTTGATGCCACAAGGAAACTATTACATGAACCTCGCCAAAGAATGTGTTAATAATGGCGTCTCGTTGGATTTGTTTTTATTTCCGAATTCTTATGTTGATGTTGCAACTGTTGGTTTAATGGTGACTCAAACAGGCGGACAGATTTACAGATATTCGTATTTTAAGGAGGCAACACATGGCAAGCAATTCATTAGCGACCTTCGCAAAAATTTCAGTCGTGAACTGGGATTTGATGCTATTATGAGATTACGATGTAGTACTGGTTTACGTCCTGTCGAATTTTTCGGAAGTTTTGTTATGAATAATACCACTGATGTCGAACTTGCTTCTATAGATTCTGATAAAGCTATTGCTATTGAAATCAAACACGACGACAAAATTCCAGAAGACGGCGTCACGTTTGTACAGAACGCTTTGTTATACACGTCTGTGTCGGGACAACGTCGACTACGTATTCACAATTTGGCCTTTGCAACTTGTTCTCAACTAGCAGATTTGTACAGATGTTGTGAGCTAGACACCACAGTCAACTATTTATCCAAATATGCTCTTCGTCAAGTACTGTCGTCCTCACCGCAGGCCATTAAAGACAATCTGATACAGAAGTGTGTGCAAATACTAGCTTGCTATCGTCAACATTGCGCAACACCGTCCACATCGGGTCAGCTGATCTTACCTGAGTGCATGAAACTGCTACCATTATATGTAAACTGTTTAATCAAAAGCGATGTGTTGGCAGGTGGCTCAGAAATGAGTTCGGACGATCGTTCTTTCCTGATGCAGGCGTGTCTCTCCATGTCGCCTGCAGTATCATCTGCATATTTCTACCCAAGAGTGCTAGCTCTGCATACTGTTGATACCGAACACGAGGAAGATTTGATACCAGATCAACTTCGTTGTTTGGGTGAGAAGTTTGAAGACAACGGAGTATATTTATTGGAAAACACTATATCTATGTTTATCTGGGTTGGCTTACAAACCGATCCAAGGTTTTTATCAGATGTATTCGGTGTGGGTGGTATTGGCCAACTTGACATAGAAATGACACAGTTACCCGTGATTGATTCCCCACTGTCGAATCGAATTCGAAAAATTATCGAGCAGATACAATCACAAAGACAAAGATATTTAAAATTAACCGTTGTACGACAACGCGACAAGCTGGAACCGTGGTTCAAACATTACATCGTGGAAGACAAAGGATTTCATTCGAGTCATTTGAGTTATGTGGATTTTCTTTGTCATGTGCATAAAGAAATCAGAAATTTGCTGAACTAA

Transcript

HSymV2.0_g08.14155_t1

TGGTAGTAGTTGCTGTGCTGGAAGTAATATCGTGGTAGTAAACAAACTGTTCCTGTTAACGTGTTACGATTTTAATTTAATAAACTGTTTATGTATGTTATTAGGAAAGTTTCAGATTAAAATTCAAGCAAGGTATCTTTGAGGTGCTAGCTCAGAAATGAATAGGCCACCACAGTCATTTCATGCAAATCAACAGAATCAACAACCGTTTTTAAATAATCCTCCTCCTGGTCAAATGATTGCTGGAGGTCCTCCATCGCAAGGTCATAACAGATATGCTCCTCCGAATCTACAGCATCCACAACAAATAAGGAAGGAACCTCCTGGTCAAGGAGTTAGACCACCATTTTCAGGACCGACTACTAATGGAATCCCAACTCACAATGGCAATACATCTCCACCTAATTCCTTGATGTCAACGCAACAGCAGATGATGCCGCCAATGAGTAATGTAACACAACAGATGAGTGGTATGCAGTTGAATCCTACGCAGCCTCCACAAAGTGCATTTTCACCTTATCGACCAACAGGACCCCCAGCCCAACAGAGACATACAGGTCCCCCTGCAAATAGAGGACAGCCACCACAGATGCAACCTCGACCATCTAGTCAACTATACAACCAACACAGAATGGTACGTCCAGGAGTACCACCTCAATCTGGTCCACCGTCAGGTCCACCTTCACTTGGTGCCCCAGCTGGATTATCTGGACCTTCATCTTTAAGTGGACCATCGTCTTTAAGTGGTCCAATAGGGACAGGACCACCACCCTTAACAAGACCACCTGGTCCTGGTTCTGGACCCACAAAGCCTATGTACCCTGAACAGAATATCCTACAGCAGCCATCCAACAGCCAACCTGGTTTTATGAATCCACATGGAATGCAAAAACAGCGCTCTAATATGACGGGGCCACCATCAGGAATGATGCCAGGAGGCCCACCTATAGGACAGGTTCAACCAGGAATGGCACCACCCCAAATGGGACAACCCCAAATAGGACAATCACAACCTGGGATGAAACATCCAGGAATGGGACAACCAGGAATGGGACAACCAGGAATGGGACAACCAGGAATGCCTCAGTTTTCACAGCCAATGAGTGCTCCTCACAATATGAGTGGAGGTCCAATTAGCCGTCAACCACCACCTATGAGTGGACCAGGAATGACAGGTCCAATGGGTGCTCCTCAACAAAAAAGAATTGATCCTAACCAAATGCCAAATCCAATCCAAGTTATGAATGATGATCAAGCAAGTTTTGATGGGGAAATATTTACAACAAGTACACGTGGGAAGGTTCCTCCTCTTGTGAGTACTAAATGCAGGATACAAGATGACGGTAATTGTAGTCCACGTTACATGCGATCATCTGTGTACTCAATCCCATGCAATCAAGATATGTTAAAAGAAAGTGGCGTACCCATGGCTATAGTTTGTACACCTTTTGCAAGAATACCAGAAGATGAACATCAGTTACGATATGTAGATCATGGACCAAGTGGTCCTGTGCGATGTAACCGATGCAAAGCATATATGAATCCATTTATGCAATTCATTGATGGTGGGAGGAGATTTGTATGCAATATCTGCAGCCACTCTTCAGAAGTGCCACCAGAATACTTCTGTCATCTTGATCACCAGGGGAGGAGAGTAGATATGTATGAGAGACCAGAATTATGTTTCGGTTCTTACGAATTTATAGCTACTACAGACTATTGTAAGGACAGTAAAATGCCAGAGCCTCCAGCTTTCATCTTCATGATAGATGTATCATACCAAAGCGTGCAACAAGGGATGGTTAAAATACTATCAAATGAGCTCCACACGTTATTGGATAGTTTGCCAAGGGATGTTGGAATGGGAGAGAGTTTGATCAAAGTCGGTTTCGTCACTTACAGCACTCAGCTTCATTTTTACAATGTTAAAGCAAACTTGGCTCAACCACAGATGATGGTCGTTACAGATTTAGAAGATGCTTTTGTCCCACTTTTAGATGGTTTTCTAGTAAATTATAAAGAAGCGAAAGCTGttgttgacagTTTGTTGGATATGCTTCCTGAAATGTTTAAAGACACAAGAGAAACAGACGTTGTGTTAGGACCAGTTGTTGCAGCTGGTTTGGAAGCCCTAAAGAGTGCTGGCATTTCTGGTAAGCTCTTCATATTCCATTCGTCCTTACCTATCGCAGAAGGACCAGGAAAATTGAAGAATAGAGAAGATAGAAAATTGTTGAACACTGAGAAAGAAAAGACGATTTTGATGCCACAAGGAAACTATTACATGAACCTCGCCAAAGAATGTGTTAATAATGGCGTCTCGTTGGATTTGTTTTTATTTCCGAATTCTTATGTTGATGTTGCAACTGTTGGTTTAATGGTGACTCAAACAGGCGGACAGATTTACAGATATTCGTATTTTAAGGAGGCAACACATGGCAAGCAATTCATTAGCGACCTTCGCAAAAATTTCAGTCGTGAACTGGGATTTGATGCTATTATGAGATTACGATGTAGTACTGGTTTACGTCCTGTCGAATTTTTCGGAAGTTTTGTTATGAATAATACCACTGATGTCGAACTTGCTTCTATAGATTCTGATAAAGCTATTGCTATTGAAATCAAACACGACGACAAAATTCCAGAAGACGGCGTCACGTTTGTACAGAACGCTTTGTTATACACGTCTGTGTCGGGACAACGTCGACTACGTATTCACAATTTGGCCTTTGCAACTTGTTCTCAACTAGCAGATTTGTACAGATGTTGTGAGCTAGACACCACAGTCAACTATTTATCCAAATATGCTCTTCGTCAAGTACTGTCGTCCTCACCGCAGGCCATTAAAGACAATCTGATACAGAAGTGTGTGCAAATACTAGCTTGCTATCGTCAACATTGCGCAACACCGTCCACATCGGGTCAGCTGATCTTACCTGAGTGCATGAAACTGCTACCATTATATGTAAACTGTTTAATCAAAAGCGATGTGTTGGCAGGTGGCTCAGAAATGAGTTCGGACGATCGTTCTTTCCTGATGCAGGCGTGTCTCTCCATGTCGCCTGCAGTATCATCTGCATATTTCTACCCAAGAGTGCTAGCTCTGCATACTGTTGATACCGAACACGAGGAAGATTTGATACCAGATCAACTTCGTTGTTTGGGTGAGAAGTTTGAAGACAACGGAGTATATTTATTGGAAAACACTATATCTATGTTTATCTGGGTTGGCTTACAAACCGATCCAAGGTTTTTATCAGATGTATTCGGTGTGGGTGGTATTGGCCAACTTGACATAGAAATGACACAGTTACCCGTGATTGATTCCCCACTGTCGAATCGAATTCGAAAAATTATCGAGCAGATACAATCACAAAGACAAAGATATTTAAAATTAACCGTTGTACGACAACGCGACAAGCTGGAACCGTGGTTCAAACATTACATCGTGGAAGACAAAGGATTTCATTCGAGTCATTTGAGTTATGTGGATTTTCTTTGTCATGTGCATAAAGAAATCAGAAATTTGCTGAACTAAATTTAGCAGACATTTGTTaataactgaattaaatagaatgaatatttcttgacgaatgactggatagatgaatgaatgaatggatggatggatagatgaatgaatgaatgaaCGGATACATAGAAGTGTGAAAAAATTTTAGTCCATACAGACAATATTTATTTCTTGGTCGCTCTGTGATCTCTGTCATGTCTGATATATGTTACACGACCACCACATGACACATAGCGTCTTTTGAATCCTCTGCCATTCATTTTTTTTGTCGAGTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P53992	Protein transport protein Sec24C OS=Homo sapiens OX=9606 GN=SEC24C PE=1 SV=3
O94855	Protein transport protein Sec24D OS=Homo sapiens OX=9606 GN=SEC24D PE=1 SV=2
Q9M291	Protein transport protein SEC24 B OS=Arabidopsis thaliana OX=3702 GN=SEC24B PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001507 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00626 all species →	Gelsolin	Gelsolin repeat	Domain	Interproscan
PF08033 all species →	Sec23_BS	Sec23/Sec24 beta-sandwich domain	Domain	Interproscan
PF04815 all species →	Sec23_helical	Sec23/Sec24 helical domain	Domain	Interproscan
PF04811 all species →	Sec23_trunk	Sec23/Sec24 trunk domain	Domain	Interproscan
PF04810 all species →	zf-Sec23_Sec24	Sec23/Sec24 zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036180 all species →	Homologous_superfamily	Gelsolin-like domain superfamily	Interproscan
IPR050550 all species →	Family	SEC23/SEC24 family, SEC24 subfamily	Interproscan
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR036175 all species →	Homologous_superfamily	Sec23/Sec24 helical domain superfamily	Interproscan
IPR007123 all species →	Domain	Gelsolin-like domain	Interproscan
IPR012990 all species →	Domain	Sec23/Sec24 beta-sandwich	Interproscan
IPR006900 all species →	Domain	Sec23/Sec24, helical domain	Interproscan
IPR006896 all species →	Domain	Sec23/Sec24, trunk domain	Interproscan
IPR036174 all species →	Homologous_superfamily	Zinc finger, Sec23/Sec24-type superfamily	Interproscan
IPR006895 all species →	Domain	Zinc finger, Sec23/Sec24-type	Interproscan
IPR041742 all species →	Domain	Sec24-like, trunk domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13803 all species →	SEC24-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0030127 all species →	Cellular Component	COPII vesicle coat	Interproscan
GO:0070971 all species →	Cellular Component	endoplasmic reticulum exit site	Interproscan
GO:0090110 all species →	Biological Process	COPII-coated vesicle cargo loading	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14007	SEC24; protein transport protein SEC24	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of HSymV2.0_g08.14155_t1 across 44 RNA-seq samples of Hydractinia symbiolongicarpus. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

44Samples

44TPM > 0

3Conditions

185.9Max TPM

125.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Whole embryo	36	36	124.96	184.46
Whole embryo · Triptolide 20 uM	4	4	130.58	185.94
Whole embryo · DMSO 0.5%	4	4	129.22	173.45

Per sample · hover a bar for the full sample record

Show the sample table (44 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR24482153	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	184.46
SRR24482133	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	181.76
SRR24482139	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	165.48
SRR24482140	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	162.94
SRR24482141	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	158.18
SRR24482143	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	157.62
SRR24482137	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	157.56
SRR24482144	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	156.22
SRR24482138	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	153.76
SRR24482174	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	152.45
SRR24482134	Whole embryo	Whole embryo	5 hpf	not recorded	SRP436676	152.31
SRR24482145	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	151.72
SRR24482177	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	144.96
SRR24482175	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	144.81
SRR24482136	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	143.79
SRR24482173	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	142.95
SRR24482135	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	142.65
SRR24482142	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	140.04
SRR24482171	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	139.60
SRR24482160	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	130.29
SRR24482169	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	125.76
SRR24482170	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	121.99
SRR24482172	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	121.13
SRR24482167	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	117.77
SRR24482162	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	107.23
SRR24482176	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	106.63
SRR24482165	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	105.05
SRR24482161	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	103.98
SRR24482168	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	95.80
SRR24482163	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	93.94
SRR24482159	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	90.85
SRR24482166	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	88.76
SRR24482157	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	58.87
SRR24482158	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	36.95
SRR24482156	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	34.49
SRR24482155	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	25.84
SRR24482150	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	185.94
SRR24482149	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	182.60
SRR24482147	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	82.94
SRR24482146	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	70.83
SRR24482151	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	173.45
SRR24482152	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	170.18
SRR24482154	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	90.20
SRR24482148	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	83.04

Source: CnidoSite RNA-seq expression matrices (HSYMB_TPM, StringTie quantification over 44 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Hydractinia symbiolongicarpus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

Direction	Partners	Most correlated partner	PCC
Positively correlated	12	HSymV2.0_g02.04041_t1	0.957531551099397
Negatively correlated	8	HSymV2.0_g09.17529_t1	-0.880610459625893

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Hydractinia symbiolongicarpus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	ready	open →
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →