Gene detail

Detailed information of HSymV2.0_g10.18341_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_10:13815634...13822343
NR annotation: XP_012566735.1, queuine tRNA-ribosyltransferase catalytic subunit 1 [Hydra vulgaris]
Species Hydractinia symbiolongicarpus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7SYK1	Queuine tRNA-ribosyltransferase catalytic subunit 1 OS=Danio rerio OX=7955 GN=qtrt1 PE=2 SV=1
Q4QQY7	Queuine tRNA-ribosyltransferase catalytic subunit 1 OS=Xenopus laevis OX=8355 GN=qtrt1 PE=2 SV=1
Q28HC6	Queuine tRNA-ribosyltransferase catalytic subunit 1 OS=Xenopus tropicalis OX=8364 GN=qtrt1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003392 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01702 all species →	TGT	Queuine tRNA-ribosyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036511 all species →	Homologous_superfamily	Queuine tRNA-ribosyltransferase-like	Interproscan
IPR002616 all species →	Domain	tRNA-guanine(15) transglycosylase-like	Interproscan
IPR004803 all species →	Family	tRNA-guanine transglycosylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43530 all species →	QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan
GO:0016763 all species →	Molecular Function	pentosyltransferase activity	Interproscan
GO:0008479 all species →	Molecular Function	tRNA-guanosine(34) queuine transglycosylase activity	Interproscan
GO:0101030 all species →	Biological Process	tRNA-guanine transglycosylation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00777	QTRT1; queuine tRNA-ribosyltransferase catalytic subunit	EC:2.4.2.64	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of HSymV2.0_g10.18341_t1 across 44 RNA-seq samples of Hydractinia symbiolongicarpus. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

44Samples

44TPM > 0

3Conditions

112.7Max TPM

81.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Whole embryo	36	36	79.85	112.73
Whole embryo · Triptolide 20 uM	4	4	94.33	100.24
Whole embryo · DMSO 0.5%	4	4	78.20	86.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR24482145	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	112.73
SRR24482141	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	110.65
SRR24482138	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	109.65
SRR24482134	Whole embryo	Whole embryo	5 hpf	not recorded	SRP436676	107.19
SRR24482136	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	105.59
SRR24482140	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	104.53
SRR24482142	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	103.81
SRR24482172	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	100.52
SRR24482167	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	100.33
SRR24482163	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	99.95
SRR24482171	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	98.09
SRR24482168	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	97.92
SRR24482135	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	94.65
SRR24482170	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	94.18
SRR24482143	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	93.23
SRR24482165	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	90.64
SRR24482144	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	90.44
SRR24482169	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	90.20
SRR24482166	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	87.66
SRR24482175	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	85.91
SRR24482173	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	85.22
SRR24482174	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	85.15
SRR24482176	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	84.44
SRR24482139	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	84.21
SRR24482161	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	83.79
SRR24482137	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	81.21
SRR24482162	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	78.76
SRR24482177	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	66.54
SRR24482133	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	64.11
SRR24482153	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	58.94
SRR24482159	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	31.59
SRR24482160	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	28.40
SRR24482157	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	19.97
SRR24482158	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	17.52
SRR24482155	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	14.60
SRR24482156	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	12.10
SRR24482149	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	100.24
SRR24482146	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	98.36
SRR24482147	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	93.85
SRR24482150	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	84.87
SRR24482154	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	86.62
SRR24482148	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	77.17
SRR24482152	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	76.88
SRR24482151	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	72.13

Source: CnidoSite RNA-seq expression matrices (HSYMB_TPM, StringTie quantification over 44 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.