Gene detail

Detailed information of HSymV2.0_g10.18432_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_10:15037246...15043108
NR annotation: XP_004206528.1, 60S ribosomal protein L5-like [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O76190	Large ribosomal subunit protein uL18 OS=Bombyx mori OX=7091 GN=RpL5 PE=2 SV=1
Q56FG6	Large ribosomal subunit protein uL18 OS=Lysiphlebus testaceipes OX=77504 GN=RpL5 PE=2 SV=1
Q26481	Large ribosomal subunit protein uL18 OS=Styela clava OX=7725 GN=RPL5 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005225 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14204 all species →	Ribosomal_L18_c	Ribosomal L18 C-terminal region	Domain	Interproscan
PF17144 all species →	Ribosomal_L5e	Ribosomal large subunit proteins 60S L5, and 50S L18	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025607 all species →	Domain	Large ribosomal subunit protein uL18, C-terminal, eukaryotes	Interproscan
IPR005485 all species →	Family	Large ribosomal subunit protein uL18 eukaryotic/archaeal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23410 all species →	RIBOSOMAL PROTEIN L5-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0008097 all species →	Molecular Function	5S rRNA binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02932	RP-L5e, RPL5; large subunit ribosomal protein L5e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.