Gene detail

Detailed information of HSymV2.0_g11.19853_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_11:12360465...12371935
NR annotation: XP_012558983.1, leukocyte receptor cluster member 1 homolog isoform X1 [Hydra vulgaris]
Species Hydractinia symbiolongicarpus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T0Z5	Leukocyte receptor cluster member 1 homolog OS=Bos taurus OX=9913 GN=LENG1 PE=2 SV=1
Q96BZ8	Leukocyte receptor cluster member 1 OS=Homo sapiens OX=9606 GN=LENG1 PE=1 SV=2
Q9DB98	Leukocyte receptor cluster member 1 homolog OS=Mus musculus OX=10090 GN=Leng1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006983 (this species only)

Pfam domain

No Pfam domain signature was detected for HSymV2.0_g11.19853_t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039875 all species →	Family	Leukocyte receptor cluster member 1-like	Interproscan
IPR019339 all species →	Domain	CBF1-interacting co-repressor CIR, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22093 all species →	LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1	Interproscan

Gene Ontology

No Gene Ontology signature was detected for HSymV2.0_g11.19853_t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HSymV2.0_g11.19853_t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of HSymV2.0_g11.19853_t1 across 44 RNA-seq samples of Hydractinia symbiolongicarpus. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

44Samples

44TPM > 0

3Conditions

175.5Max TPM

73.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Whole embryo	36	36	69.95	175.54
Whole embryo · Triptolide 20 uM	4	4	87.17	115.69
Whole embryo · DMSO 0.5%	4	4	87.08	125.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR24482163	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	175.54
SRR24482161	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	119.55
SRR24482168	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	109.02
SRR24482162	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	109.00
SRR24482166	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	104.60
SRR24482170	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	97.88
SRR24482172	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	92.96
SRR24482171	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	89.02
SRR24482176	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	88.86
SRR24482165	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	86.57
SRR24482167	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	83.67
SRR24482169	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	81.57
SRR24482175	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	79.75
SRR24482153	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	71.67
SRR24482173	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	70.40
SRR24482177	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	69.33
SRR24482174	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	68.86
SRR24482159	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	62.57
SRR24482133	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	61.67
SRR24482134	Whole embryo	Whole embryo	5 hpf	not recorded	SRP436676	61.24
SRR24482138	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	59.69
SRR24482142	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	59.08
SRR24482145	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	57.16
SRR24482136	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	57.15
SRR24482140	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	54.13
SRR24482141	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	50.55
SRR24482135	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	48.34
SRR24482137	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	48.33
SRR24482139	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	46.64
SRR24482144	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	46.01
SRR24482143	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	45.12
SRR24482158	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	39.18
SRR24482160	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	36.62
SRR24482155	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	30.73
SRR24482157	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	29.37
SRR24482156	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	26.49
SRR24482147	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	115.69
SRR24482146	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	111.72
SRR24482150	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	63.22
SRR24482149	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	58.05
SRR24482148	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	125.97
SRR24482154	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	111.62
SRR24482152	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	57.91
SRR24482151	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	52.82

Source: CnidoSite RNA-seq expression matrices (HSYMB_TPM, StringTie quantification over 44 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.