Gene detail

Detailed information of HSymV2.0_g11.20430_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_11:24619132...24622998
NR annotation: XP_047128575.1, NADPH--cytochrome P450 reductase [Hydra vulgaris]
Species Hydractinia symbiolongicarpus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HSymV2.0_g11.20430_t1

ATGTCTGTGGAAGCCGCAGAGGCATATGCTGTTGGACCGCTTGATCTTATCCTTCTCTTTTCATTTATTGGATTGGTTGTTTATTGGTTCATGCGCAAGAAGTCTGAGCCTAAGTCTGGAGTAAATGGGTTAATTGACTTAAAGCCAGTAAATATACAGAAGTTAAATAATGTTGATGTTGTCGATTCATCAGGATTTGTTAGTAAAATGAAAAGATCAGGTAAAACGATCGCAATTTTCTATGGTTCACAAACAGGAACTGCTGAAGAATTCTCACAACGTCTGGCTAAGGATTCACAACGTTATGGTTTAAAGTCTAGTGTGTTTGACCCTGAAGAATGTGAAATGGACGAACTGGTCGAGTTAAAAACTGAAATTGACAATTCTTTAGCCATTTTTGTGGTCGCTACATATGGTGAGGGTGATCCCACAGACAATGCTATCCCGTTTTATGATTGGCTAAAAGAAGAACAAGATTTGGAGGGCTTGAACTATGTCGTGTTTGCTCTTGGGAATAAAACATACGAGCATTATCAGGGCTTCGGAAGGTACGTCGACAAAAGGATCGCTGAGTTGGGAGGTAATCGAATTTTTGAGATTGGTGAAGGTGATGATGATGGTAATATTGAAGAAGATTTTGTCAACTGGAGAGAAAAGTTTTGGGTAGCGGCTTGCGATTTCTATGGCGTTAGTAACGACTCAAGGAGGTTGAGTCAATGTGTGTCGAGAGATTTCACCCTGCGGAAATTTCCCGATATAACGGATGAGAAAGTTTTTAAAGGAGAAATCACTAAACTTGGTGCTTTTGTAAATCAGCGCCCTCCCTATGATGCGAAGAATCCGTACATGGCCGATCTTGTTGTTAATCGGGAAATACACAAAGGAGGAGAGCGTTCGTGTATGCATATTGAAATCGACATTTCTAACTCTGGCATTCGATACGAGGCTGGAGATCACGTGGCTGTATACCCTACAAACGATCCAGAATTAGTTGATACAATCGGTAAACTGTTGTCTACCAACCTCGATGAAGTAATTTCGTTAAACAACGTCGACGAAGATGCAGCTAAGAAACATCCATTTCCGTGTCCCTGTTCGTACCGCACAGCTTTGTTGCACTATATTGACATCACCAGCACTGTCAAACATCATATTCTAACCGAGTTGATCCAGTATACTAAAGAAGAAAAAGATTTGGAAATGCTGCGCAAACTTTTGAGTTCAGACGAGGAAGGCAAAAATCTTTATAACGAATGGGTTGTTAAGAACCATCGCCATATCACAAGTGTATTGGAGGACCTACCGTCGTGTAAACCACCCCTTGACTTATTATTAGAATTATTGCCCCGTCTACACTGTCGCTATTACTCTATATCTTCTTCGCCGAAAATGCATAAAACCAAAATTCACATTACGGCTGTGTTGGTTGATTGGATTGCGCCAACTGGGAGAAGACAAAAAGGTGTTGCTACCTCGTGGCTTAAAGGAAAAATTCCGTTAAACGGAACTTTCCCAAAAGTTCCTATATTTGTCCGACATACAACCTTTCGTCTACCGGATAAATTACATTTGCCGGTGCTTATGATTGGCCCTGGCACAGGTTTCGCGCCGTTTCGTGGTTTCATACAAGACAGACACTCCGAAAAAGAAACCGGGAAGGATATCGGGGAGATTAATTTGTATTTCGGTTGCCGTCACAAATCCGAAGATTTCATTTATGAAGAAGAAATAAACGAGTTCGTTACAGCAGGTACAATTACCGACCTGCAACTAGCATTTTCTCGTGATCAGGAAGAAAAGATTTATGTGACGCATAAATTAAAGGAAAATGAAAAGAAGATATGGGAATTGATAAAAGCAGGTGGACATCTGTACGTTTGTGGAGATGCACGTCACATGGCGAAGGATGTACATTCCATTTTTATAAATGCCATCAAAACGTACGGAGAAAAGTCGGAACAGCAAGCCAATAATTTTCTTAGTAGTTTAAGCAATAAAGGAAGATATTCGGTGGACGTGTGGTCCTAA

Transcript

HSymV2.0_g11.20430_t1

AGGACTAAAATTAAAAATGTCTGTGGAAGCCGCAGAGGCATATGCTGTTGGACCGCTTGATCTTATCCTTCTCTTTTCATTTATTGGATTGGTTGTTTATTGGTTCATGCGCAAGAAGTCTGAGCCTAAGTCTGGAGTAAATGGGTTAATTGACTTAAAGCCAGTAAATATACAGAAGTTAAATAATGTTGATGTTGTCGATTCATCAGGATTTGTTAGTAAAATGAAAAGATCAGGTAAAACGATCGCAATTTTCTATGGTTCACAAACAGGAACTGCTGAAGAATTCTCACAACGTCTGGCTAAGGATTCACAACGTTATGGTTTAAAGTCTAGTGTGTTTGACCCTGAAGAATGTGAAATGGACGAACTGGTCGAGTTAAAAACTGAAATTGACAATTCTTTAGCCATTTTTGTGGTCGCTACATATGGTGAGGGTGATCCCACAGACAATGCTATCCCGTTTTATGATTGGCTAAAAGAAGAACAAGATTTGGAGGGCTTGAACTATGTCGTGTTTGCTCTTGGGAATAAAACATACGAGCATTATCAGGGCTTCGGAAGGTACGTCGACAAAAGGATCGCTGAGTTGGGAGGTAATCGAATTTTTGAGATTGGTGAAGGTGATGATGATGGTAATATTGAAGAAGATTTTGTCAACTGGAGAGAAAAGTTTTGGGTAGCGGCTTGCGATTTCTATGGCGTTAGTAACGACTCAAGGAGGTTGAGTCAATGTGTGTCGAGAGATTTCACCCTGCGGAAATTTCCCGATATAACGGATGAGAAAGTTTTTAAAGGAGAAATCACTAAACTTGGTGCTTTTGTAAATCAGCGCCCTCCCTATGATGCGAAGAATCCGTACATGGCCGATCTTGTTGTTAATCGGGAAATACACAAAGGAGGAGAGCGTTCGTGTATGCATATTGAAATCGACATTTCTAACTCTGGCATTCGATACGAGGCTGGAGATCACGTGGCTGTATACCCTACAAACGATCCAGAATTAGTTGATACAATCGGTAAACTGTTGTCTACCAACCTCGATGAAGTAATTTCGTTAAACAACGTCGACGAAGATGCAGCTAAGAAACATCCATTTCCGTGTCCCTGTTCGTACCGCACAGCTTTGTTGCACTATATTGACATCACCAGCACTGTCAAACATCATATTCTAACCGAGTTGATCCAGTATACTAAAGAAGAAAAAGATTTGGAAATGCTGCGCAAACTTTTGAGTTCAGACGAGGAAGGCAAAAATCTTTATAACGAATGGGTTGTTAAGAACCATCGCCATATCACAAGTGTATTGGAGGACCTACCGTCGTGTAAACCACCCCTTGACTTATTATTAGAATTATTGCCCCGTCTACACTGTCGCTATTACTCTATATCTTCTTCGCCGAAAATGCATAAAACCAAAATTCACATTACGGCTGTGTTGGTTGATTGGATTGCGCCAACTGGGAGAAGACAAAAAGGTGTTGCTACCTCGTGGCTTAAAGGAAAAATTCCGTTAAACGGAACTTTCCCAAAAGTTCCTATATTTGTCCGACATACAACCTTTCGTCTACCGGATAAATTACATTTGCCGGTGCTTATGATTGGCCCTGGCACAGGTTTCGCGCCGTTTCGTGGTTTCATACAAGACAGACACTCCGAAAAAGAAACCGGGAAGGATATCGGGGAGATTAATTTGTATTTCGGTTGCCGTCACAAATCCGAAGATTTCATTTATGAAGAAGAAATAAACGAGTTCGTTACAGCAGGTACAATTACCGACCTGCAACTAGCATTTTCTCGTGATCAGGAAGAAAAGATTTATGTGACGCATAAATTAAAGGAAAATGAAAAGAAGATATGGGAATTGATAAAAGCAGGTGGACATCTGTACGTTTGTGGAGATGCACGTCACATGGCGAAGGATGTACATTCCATTTTTATAAATGCCATCAAAACGTACGGAGAAAAGTCGGAACAGCAAGCCAATAATTTTCTTAGTAGTTTAAGCAATAAAGGAAGATATTCGGTGGACGTGTGGTCCTAACGAAGTATGAAATACATAGAAAATTTGATCATTTATCTTCAATGGCTTTCTACAAAATAAAATCGAGAAAACCAAAAAAATGATGTAGAAAAATATTGGTAATTTTTATAGACGATCACAGAGATAATCAGCCGCCCTTCAAGATAATATTTGACGGGCGAAATTTGACTAAGCAAATTTTATAATGTTCGTTCTCCTTGCAAGGGGAATGTATGTGTTATCTTGAGGGTAGAAATTTTCGCAGTATATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07994	NADPH--cytochrome P450 reductase OS=Musca domestica OX=7370 PE=2 SV=1
Q27597	NADPH--cytochrome P450 reductase OS=Drosophila melanogaster OX=7227 GN=Cpr PE=1 SV=2
P16435	NADPH--cytochrome P450 reductase OS=Homo sapiens OX=9606 GN=POR PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001643 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00258 all species →	Flavodoxin_1	Flavodoxin	Domain	Interproscan
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan
PF00667 all species →	FAD_binding_1	FAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023208 all species →	Family	NADPH-cytochrome P450 reductase	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR008254 all species →	Domain	Flavodoxin/nitric oxide synthase	Interproscan
IPR029039 all species →	Homologous_superfamily	Flavoprotein-like superfamily	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR001709 all species →	Domain	Flavoprotein pyridine nucleotide cytochrome reductase	Interproscan
IPR001094 all species →	Domain	Flavodoxin-like	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR023173 all species →	Homologous_superfamily	NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily	Interproscan
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR003097 all species →	Domain	Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19384 all species →	NITRIC OXIDE SYNTHASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003958 all species →	Molecular Function	NADPH-hemoprotein reductase activity	Interproscan
GO:0010181 all species →	Molecular Function	FMN binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009725 all species →	Biological Process	response to hormone	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00327	POR; NADPH-ferrihemoprotein reductase	EC:1.6.2.4	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of HSymV2.0_g11.20430_t1 across 44 RNA-seq samples of Hydractinia symbiolongicarpus. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

44Samples

44TPM > 0

3Conditions

167.6Max TPM

103.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Whole embryo	36	36	100.99	148.59
Whole embryo · Triptolide 20 uM	4	4	127.23	167.57
Whole embryo · DMSO 0.5%	4	4	98.27	131.81

Per sample · hover a bar for the full sample record

Show the sample table (44 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR24482138	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	148.59
SRR24482141	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	146.57
SRR24482140	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	140.23
SRR24482145	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	139.32
SRR24482136	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	138.15
SRR24482144	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	137.20
SRR24482143	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	136.70
SRR24482139	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	135.35
SRR24482135	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	135.29
SRR24482142	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	135.02
SRR24482134	Whole embryo	Whole embryo	5 hpf	not recorded	SRP436676	134.42
SRR24482137	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	133.09
SRR24482177	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	129.87
SRR24482175	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	124.47
SRR24482172	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	122.39
SRR24482173	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	116.93
SRR24482174	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	116.48
SRR24482165	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	112.23
SRR24482171	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	111.23
SRR24482133	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	111.11
SRR24482167	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	103.88
SRR24482169	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	100.95
SRR24482153	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	100.85
SRR24482176	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	99.09
SRR24482168	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	98.97
SRR24482166	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	97.32
SRR24482170	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	89.89
SRR24482163	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	80.97
SRR24482161	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	69.14
SRR24482162	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	57.42
SRR24482160	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	27.37
SRR24482157	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	24.82
SRR24482156	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	24.18
SRR24482159	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	20.80
SRR24482158	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	18.32
SRR24482155	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	17.18
SRR24482149	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	167.57
SRR24482150	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	160.89
SRR24482147	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	91.88
SRR24482146	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	88.60
SRR24482152	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	131.81
SRR24482151	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	126.58
SRR24482154	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	74.37
SRR24482148	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	60.33

Source: CnidoSite RNA-seq expression matrices (HSYMB_TPM, StringTie quantification over 44 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Hydractinia symbiolongicarpus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

Direction	Partners	Most correlated partner	PCC
Positively correlated	43	HSymV2.0_g09.14975_t1	0.976272845237795
Negatively correlated	12	HSymV2.0_g12.20962_t1	-0.938789987080417

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Hydractinia symbiolongicarpus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	ready	open →
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →