Gene detail

Detailed information of HSymV2.0_g11.20587_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_11:26180271...26201508
NR annotation: XP_012555732.2, ATP-dependent DNA helicase Q4-like [Hydra vulgaris]
Species Hydractinia symbiolongicarpus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HSymV2.0_g11.20587_t1

ATGTCTGGAGACAACGACACTGATTACAGTATATTTCGTGACGATGTGTACAAAAGAAGACGCAGATCCAATCAAAATATAGTCAAAAAATTAATTCACCGAGAAACTTTCCAAATAAGACCAAATACAAATTTTCACGTTGCAAGATCATTCACGTTAAATGTATTTCCTAATTTTACTGTAACTAATGTGGAGAAACCGCCATGCTTTTTGAGAAAATTTTCTCCAGACGGACATCACTTTGTGGCGTTCTCTAGAGATCAAAGTTCGATTGAAATATATGAGTTTCAAGGTCCCTGTGCAGTGGAAAAATTACTGCATAAAGCTTGTACTGGTGTTCCTGAAGATATAGATGAATTGAAGGCGAATATGTTTGATCATTTTTTTAAACAAAAAGCTGTTGTAACTGTCGCTAGTTATGGTGAACACTTGAACAGAGAATGCAGTTTGTTTACTGATGACGGAAAGTTTGTTATTATTGGTTCAGCTTCAGCTATACCCGAAGATTTCCATCCACTTTTTTATGACATTTATCGCAATAACGAATCGGTTGCACCAAATGCCCGGTCACCACTGGAAGACTATTCTATCCATGTTGTCGATTTGTGTCATGGTAAACTGCACGATTCCAGAGCTTTTAAATGTGATAAAATATTTTTGTCCCACAATCAAGGTATTTATTTGTATAAAGATCTTCTGGCAGTCTTATCTGTACAACATCAAACGATTCATATATTTCAAGTAACACCTGAAGGATATTTTGTTGACGTTCGAGTAATAGGAAGATTTTGCCACGAAGACGATCATTACCTCGTGAATCGATTAACAGATACTTCTAATACGCGCCCGTTCCGCGATAAATGCTTCAACAGTTTAAAGCATCGTTTACTAACGTATTTATATCGTTATTCTTCCCAAGATGGATCGAAAGAATCTATACGAAGGTTTTATCAGTATTTCGATCAGTTTAAGAACTTGCGTATGTGGAAGATGCAGTTACTAGATGAAAGTCATTTGTTGATCAAGTATGCTGCGGAAGATGTTGTCACGTTGAAAGCTGCCGATCCAAACTCACAAGCATCATTCTTCGCAGTGTACAACATGTCGACGACAGAGATTGTCGCGATTTATCGAAACACGTCCGAAGAGCTTTTAGATATATTCGAGCAGTTTAATGATCATTTTAGGAATGCTTTACCTCATCAAGTTGCGCAGTTTTCTTGCTCGACTTCGAGTAATATTTATGCTCGCTACAATCAACGTAGATTTAAAAGTACAATCATCAATGCAAAATATGGTGGACATAAAGAAGCAGTAAAGCGTCTTCTCGCGCAGTTACCTATCAGTTCGCAGTCTTACAGTAGCAGTCCATTCCTTGATCTGTCTTTGTTTAGTTATGATGATAAATGGGTGTCAGTGATGGAAAGACCAAAAGGATGTGGTGATCATCCCATTAGGTTCTATTGTCGTGACACTGGCTTGCTCAAATATAAAATCTATGCTGGTGTTCATGGTCGGGCGTTACCGCCCACTGGAAGACGATTAGTGGCTTTTACCTTTCATCCGTTTTATCCGTTTGCAATCTCAGTTCAAAGAAACAATACCGAATACATTGTAAATTTTCATCTTCGACATTTCACCGGAACACCTGAACCAGACCACCCAATGGAGTGTGAAATTACCTCTATAAAAAAAGAATTGAAATGTTGGGAGTCAATGTTTGCAAGAAAATATGGTAGAAAACCAGCAAAGGAAGACATCGATGACAGCTCTGCAGAAATAAAAGAATCTTACAAGCGATATTCTTACCTAAAGAAAAAGAAAGATGAGAGTAACGATTGTGAAAGACAGAACAGCAGTAACTTAGTACCAGATGATGGTGTTTTTGGCACAAGTCTTAACAAAAAACACAACAAAACACCTCCAATTAAAAGCACAAGCTACATTAAACACGACCCTGATGTTTCATGGAGGCCGAAATTAAAACCTCTGAAAAGAATTGGTTTATCAGAGACACAAACTTTGGAGAAGGATTGCGAGAAAGAAAACGAGCCTACTATGGGAAGTATTGTGCTGGTTAAAAACCCATCAAATAATTCTGAAGATGTTCCCTGCAAGACTAAGGAGAGAATTCCAGTAGTAAAAAGTAAGGGTTTTGTCAAGAAAAGATTGTCATCATTTGGTAGAAATCTGTCATGTGACTTACTTGAGAGCTGTAAACAATCTCTTGGCGAGAAATCTGAGAAAAAAAATTCTTTAAATAACGTCATTAATGATGACAAAGACACACCAGCTGTTGTTAATTCACAAGCTGATGTCTCACTTAAGGAGGTAACAGAGACAAGCTCAGTGAAAGAGAATCTGGAAAAGGTTTACACGATGGAAGAACTTTGTTTAGATAAACATTTAGATAATAAAGAAGAAAGTGAAGCTACCTATCACAAAAATAATTTGACAAATGCTAATACACAAGACACACAATCTTCTATTAATAATGAAATTCAATCACCTAAGAAGAACAACCCAACTAACTCTGACGAACCAGTTTTAAAACTTATTGCAATTaaaaagaagaagaagaagctgaagaagaaagaagaagaagaggaaacaattgttgaaagagttaaaagaaaaagagaggaggaaagcaatacagaagaagcaacaagcaagaaAGTTAAATTAAGTAAAAAGGCAGCCGAGAAAGGAAAGAGGTTAGTTAGCGATAACTTTGTTAAAATCGATCTTAAGAAAAAAACATATCAACGTGGTGTGAAAAAGCTCACAGGTGGAGCGTACAAGCGAAGAATGTGGAAGAAGAAAACCAGTTTTGAAGTACCTACGAAAAATGGAAGCAAATGCTTCAAATGTGGAGGAGAGGGCCATTGGGCGAAGTTTTGTAGAGGTAAACCGAAGAAAGTGGACCCGTTTAAAAAATTAGATGAAGAGATGACATCGTTGGAATTTCAACATTTAAATGAAGAGCAGGGAAGTTGTTTTGACTATTTGAATGAAGATACACAAGATGAAAGAAATAATCTTATGTGTTCCAAGAAAAATTTCACAATTGATGAAGTCATGCAGATTGAACCATGTTGGCCACGCACACCATATAGGATGGAAATAAATGATGAATTATTCTGTCCCTTGTTTAAATCTGAAGACGGGAAACCGGCTAAAGAAACCTACAAAAAAGTCAAATCAAATCTAAAAATATTTGGACATGAGACTTTTAGAGAAGGACAACATGAGGCTGTTGCAAGGATTGTGTCTGGTTTGTCCACTTTGGTTATTCTCTCAACTGGTTCAGGAAAATCGTTATGTTATCAGCTACCAGCTTATATGTATTTTAAAGAAAGAAAAGCTATGACAATTGTTGTGTCACCGCTTGTTGCTCTCATGCAAGACCAAGTCGCAGGGCTTCCTTCATGTCTACCCGGTGCTTTCTTAAACAGTAATATGACTAAACTTCAACAACAGCGCGTCATCACAAAAATCAAAGAACAAAAGATTGCAGTCCTGTTAGTATCACCGGAGGCGCTCGTGTCCGGTGGGTTTGGCACCGGTATATTGCCACCCAAGTCCACTCTACCACCGATAGCATTCGCTTGTATTGACGAAGCTCATTGTTTATCTGAGTGGTCTCACAACTTCCGACCATCTTATCTGCGTGTTTGTAAAGTTCTGCGGGAGAGATACAACATCAAATGTTTGCTTGGTCTAACAGCCACAGCATCGCAAACCACTGCAACTTCAGTTATTCATCACTTGGGAGTTCCATGTGAGGGATCTATTATCCGTGATCCGAACCCAATCCCTCCAAACTTGCATATCACAGCTTCACGTGATGAAAACAGAGATTTAGCGTTGGTTGAATTACTTCAGATGAAACCTTTCGATGAATGTGATTCAATCATTGTGTATGTAACAAGGCGTCTTGAAGCAGATCGGCTTGCTGTAATGTTGAGAACTTGCCTTCCTGATCCTCTGCCaaaagaagaaaaaaaggaaattgaaaaagagaagaaaaagaaaggaaagtcaaaGGCGTCCACAAAACCTTTTTGGTGGAATGTGGAATGTTATCACGCTGGTTTGACACCCGCCCACCGTCGACGCGTTCAAAATCAATTCATGTCGGGTGAACTCCGAGTGGTCGTTGCAACGGTCGCGTTTGGTATGGGTCTTGATAAGTCAGATGTTCGGTCTGTTATACATTTTAACATGCCAAAGAGTTTCGAGAATTACGTTCAAGAGATTGGTAGAGCTGGCCGAGACGGAAAACCATCTTTCTGTCATGTGTTTCTGGACGATGACTGGAACGATCTGAACGAACTTCGTCGACACATATACGGAAATACTGTCGATCGCAGCATAGTCAAGAAATTTGTCGACTTAGTATTTCCTTCTTGCAACTGTTCCGAGTTAAGCAAACATCACAACAGTTCAACTAAAGATAGTGATATTCCCCAGGTGGATTCTGCACCTCCACTTCTTGACAAAGAGGCGGAGGAATTATTTAGTCAGGACAACGACGACGCGATGTGTACCGACATCGAGATGATGGGTGTAACACCTAGTATAAGCAAAGCTGCTGAAGATCACGAAGATATGATCCTTTCACAGAAATGTTGTTCTGGTCATAGAAACGCTTTACCAATCGATTCAACAGTGCTAGAATTAGATATGCCTCAAGAAAACATATCAACATTAATGTCTTATCTAGAATTACATCCGAAACGCTGGATAGAGGTGCTTAATCCTATTCTCTCTTCTGCGTCCGTCAAATGTTACGGAGGTCCGGAGCAATTTCAGTTATTAGCAAAAAAGTTTCCGCCGGTTGCACTCTCATTGAGGCTTCTGCCGCAGAGTGAGCTGAAATATCTCGCAGATATGAAACAAATAGATTTGGATTTTATGACGATAGCTGATAAAATGTGCTGGGATGTGATCACGGTTGCTCGTGAAGTGCGTTCACTTCAATGGAATATGGCGTTCGCTTTGGACGCGCCGTTGAATACCACGGGCAAATCTGGAATCATTGTTGAGTGCGGACAATTAAGTTTTCATATTGTAACGCGAGAGGGGATTGGTGACGACGAAAAGGACGAAATCTGTGACTTTTTACACGAAAACGTCCTAGCGCAGGAAGAAAATCGCTTACTGCAATTAAATGCGTTGTATAATGTTTTGAAAGATTTATCTTGTCAACATTTTTGGGAGTTGCCTTCTGATAAACGAATTGATCAAAAAGCTCGCGAAAATATTGGTAGATACTTCATGTATGACAACAAAAAACAACTTGAAATCTTAAGAGAAATGTGTAGTTCTGACACTAGTATATGTACTCCTCCTCGGAGATGGAACTTGATAGCAAGTGATATTAAGAACTTGCTAATCTCTCATCCTGATGAAAACTTTACAGGAAGAGCTGTTGCTAGGATACTGCAAGGCATTAATAGTCCGTGTTATCCGGCAATTACTTTCGGTAGAGATCGTCGTTTCTGGAGACAATGCTTAGATGTGGATTTTAACGAATTGCGTAAATTTGCAGTTGAAGAAATTAGTCGATTTAGAAATTGA

Transcript

HSymV2.0_g11.20587_t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D0A0	DET1 homolog OS=Mus musculus OX=10090 GN=Det1 PE=2 SV=2
Q7L5Y6	DET1 homolog OS=Homo sapiens OX=9606 GN=DET1 PE=1 SV=2
O94761	ATP-dependent DNA helicase Q4 OS=Homo sapiens OX=9606 GN=RECQL4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007416 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09737 all species →	Det1	De-etiolated protein 1 Det1	Family	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019138 all species →	Family	De-etiolated protein 1, Det1	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13374 all species →	DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031461 all species →	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:1990756 all species →	Molecular Function	ubiquitin-like ligase-substrate adaptor activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10730	RECQL4; ATP-dependent DNA helicase Q4	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.