Gene detail

Detailed information of HSymV2.0_g12.21971_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_12:22004729...22013025
NR annotation: XP_047136050.1, eukaryotic translation initiation factor 4B [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

HSymV2.0_g12.21971_t1

CGTCGCACGTTCCGAACGTATGTCAAAATGGCCGCCACAGGTGGTGGCAAAAAAACTGGTAAAAAAAAGAAGGGCAAAACATTGAGTTTAAATGAATTCATCGGTGAATCTCCTGCAGCGTATACAACACCCTCAAGAAAGGTTGATTGGGGTGATGATGTTGACGATAGCCTTGGTCATGTTGACTTGGCTGAAGAGTATGGTGGACCTCCAAAGCCTTCAATAGATCTCAGTAAATTACCCAGTGCTCCAAGATCTTCAAGAGGTGCAGATATTGACATGAGTCGTCTGCCAAGTAGACCACCCTACACTGCATTTCTTGGAAACCTGCCCTTTGATGTCTCTGAGGATGATATCAGAAATCTATTTCAAGGGCTTCAGGTTGAGAATATCCGTTTTCCACAAGAACAAGGTCGAATGAAAGGATTTGGTTATGCTGAGTTTTACAACCTGGAAGAGTACAAAAAAGCACTGGGTCTTACCAACGAGAAAGTACGTACGCGACAAATCAGAATCGACATCGCTGACCAGGCGGGTAAAGATGGACCGGGAGGGAGAGGAGATTCAAGATATGGCGGACGTGATATGGATGATGATAAAACATCGGGTGACTGGAGACGTGATATGCCAGAATCAGGAGGAGGTGGTGGTGGCAGGTATGAAGATCGGGGAGGCTATCGAAATGATACAAGAGGAGGAGACTTTGCTGGACGAGATTCTAGATTCAACAGACCTGCCGGCCCAGCTGACACTGAAGACTGTTGGCGTCGAGATGATCCTCCAAAAACTAATGGTCATGACGATGCTTGGAGAGGGGGAGGTCGTGATTTTAGAGATGAAAGAGATGGTGGCTTTAGAGGAGACAGAAGCTTTGGCGATGGAAGGAGAGAGCATAGGGACGAGAGGGGTAGATATGGAGGAGGAGGTTTTAGCGACTATCGAGATGACAGAAGAGGTTTCAGGGATGACCGGGGAGGCTTTAGAGACGATCGAGGAGGTTTTAGAGACGATCGAGGAGGTTTTAGGGACGATCGAGGAGGCTTTAGAGACGATCGAGGAGGCTTTAGGGATGACCGAGGAGGCTATCGGGGTGATAGAGGGGTTTTTAGAGATGACAGAGGAGGCTTTCGAAGCGGTGGAGGAGGCTTCCGGGATGAGAGATCGGGATTTAGAGATGAGAGAAGGGATGGTTATCGAGAGGATAGATCCAGAGATAACGCTGGTCCTGCTGACCATTCTTCAGAACATAAGGAGCGTCCTAAACTTAACCTTCAAGCAAGAACTGTTGCAAAAACAGACGATACTACTTCGCAAAGCAGTTCCATATTTGGCGGTGCGAGACCAGTGGATACTGCTGCCAAAGAAAGACAAATCGAGGAAAAGTTAAACAAAATTCACGTTAGTGAAAAACCACATGGCGAAAGAAGTGATAGCAAAGAACGTGGTCGGGATGATAGCCACGAAAGAGACCTTAGTGATAGGACTGATGACGATGGTGTTGATAATTGGCGAGATGAAAGCATACGTCAAGACAAGCCACGTGTAATGAAACCAGGATTTGCGAGTGATCGAAGAGAAGCGAGAAAAAGCGATAGTGACGAAATGTCAGTGTTGAATAAGGAAAATCGTGGAAGAGGTGCTGGGCGGGGTGGCCATGGGCGTGGTCGCTCTCCGAAGGATAAGAAAAATAAAACTGGTCCTGTGATACCACCAAAATACGAAGAGCCTGATCAACCGGAGTTCTCTCGGTCAAGCAAGTTTGCTGCTTTGAACGTCGAAGATGAAAACAGTCACTCAGACGAGGATGAGGTGGAAACTTAAAAGTTTTTGTTAGATTAGATTTGGCTCGTAAAATTAGAAACAAGTTCCGCGATTGGTTTGCCAATTGCAGGCTTAATTTTGATTGGAGAAAAACACTTATCTTGGGAATAAGATTTTATATGGTGAACATTATGATATGTAGGAAAGCCCGCTGTAAGCTGTATACAGTACTACTCGTAAATATTTTTAACCTTGCATTCTTGAAAGTTTTTATTGTCCGCCCTTTTAATCTTTATCGCATCTTACTGTTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23588	Eukaryotic translation initiation factor 4B OS=Homo sapiens OX=9606 GN=EIF4B PE=1 SV=2
Q8BGD9	Eukaryotic translation initiation factor 4B OS=Mus musculus OX=10090 GN=Eif4b PE=1 SV=1
O14369	Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sce3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005357 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23236 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03258	EIF4B; translation initiation factor 4B	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.