Gene detail

Detailed information of HSymV2.0_g12.22020_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_12:22481614...22515962
NR annotation: XP_027053966.1, sperm-associated antigen 16 protein-like [Pocillopora damicornis]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

HSymV2.0_g12.22020_t1

GAAACAGTTTAATATTCGAAGTATGAAAATGGTAGATTAGCTGGACAGGTCAATGAAATTTAGTAAAAGGTCAATTAGTTAACCTAACTGCGAATATTTGACGATGGATAACTCTCACATAAAAGAGGATCTGTTCTTTTTAGAAGATGCATCAATTGAACCAGATAGTGATGATGACTTCAAATATGAGGAGGTTACTACAGATTACGTATCTGATAACGAAGTGGATGAAGATTTCGAAACTGCTTTTCGAACATCTAATAAAAAGGAAACCACTAGTTCAGAAGAGCTGCACAATGAAGATAATGTTGATCCAAAGGCTGAAGTGGTGGAAGATTTCATTCAAAACTTTCTTGCAAGAATGGATATGAAGAGAACCTTCGACTGTTTTCAAACTGAATGGGAGGAAATAAAGAAAAAGGGTCTTTTAAAGCAAAACGATTTGAATGGTGTTGCTGATTGTTATATAAGAAATCAACAGTTGCACGATGAAATTAGTTCGTTAAAGAAAGATCTAAAAAGATTCCAAGATGCTGCGCAGCGAGCAAAAGATACACACCTTAAACTGAGAAGAGAACGCGATCATCATAGAATGCATCATAAAAGAGTTATACAAGAGAAAGATCAACTAATTACAGACATCAAAAGGTTGAGACAGCATTATCAATTATATGAACCAACTTTAAAAGCACTAAGATACAAGTATGAGGCTGCCATGAAGGAGAAAATGCTGACCAAGTTAGAACGGGATCGTGCTGTTGCGCAGATCGAAGGCCTTCAATCGGTGCAATTAGTAAGTTTCGAATGTGCCAAAGGGAAATCTTCTGAAAATATACTATCAAGTGAAAAGTCTTCCGACGGCGAAAAGGCCGGGATTTCTCAGAAGAATGCCAAGGATTCGGAATTCCCTCCAGACAAGGGTGTTAATCCATTTTTGTCAAAGCAACGAATACCTTGTGTTCATCTTACACGAAGTGGTGGGTATAGATTGACAAACACGATCGAAGCACATTCTTTAGCTGTGAGTGGGTTTGCGTTGCATCCAAAAAAGCAGATTTTAGCCACAGTGAGTGATGATAGAACATGGAAACTGTGGTCTCTTCCAGAGGGTGACGTTGTGATGACAGGTGAAGGACACACAGACTGGTTGTCCGATTGTGACTTTAACCCCCTGGGTACAAAACTGGTAACAACATCTGGTGATACGACAGTGAAAATATGGGATTTCGCCGAAGAGCGATGCGTTGTTTCATTTGATGGCCACACCCATCCTGTGTGGGGATGTAGTTGGCACAGTGGTGGAGATTTTGTTGCAACATGTGCAATGGATGGTACTTCAAAAATATGGGATCTAAACAGCTTACGTTGTCGAAGCTCACTTCGTGGTCACACTGATTCTGTAAATAGCATTGAATTCCTTCCCTTCTCCAATACGTTATGCACGTGCTCGGCTGACAAAACTATCGCTATATGGGATGCTCGAACGGGCTTGTCGGCTCAAACTTTGCATGGTCACGTACATTCAATTAATCATGTTACATTTAATACGCAAGGAGACTCGTTAGCTTCTTGCGATGCGTATGGCGTTGTCAAACTTTGGGATATCAGAAACTCGTCTGTCTCGACAACTATCGACATGGGCCCTCATCCTGTTAATCGAGTGGCGTTTGATCCAGGTTCATCGGTAGTAGCTGCTGCCTCGAATGATGGTGTTGCCAAGATATACGAGATCAGTACAGGTCACATCACGCCTCTTTCCCCTCATGACGATGCCGTACAGACAGTATTGTTCGATCGAAATGGTGAATACATGGTTTCAGGTAGCTCAGACTCGACTGTCAAAGTATGGTCATAAAGCTACGATCGGCAACTGTCTCGTGCAACTTTTTAAACGAATGCTGTTTTTTCATTTTTTACATATAGCATTTATTAATAGCAAGTTTTTATTCAAAATTGCTCAATTTTTTCCAGCTTTTAATAAAGTAAGAAGAATTCCACGAAATTAACAGTTTCATAGTATTGTCTGTTTAAGTCAAGTCTACAATACTACTAATTGATTACTTCAAACGCATTAATTTTCGCGTATTATTTTAGGTCCTAAACATGTGTTTCGCGTGTTTCAAATTTTCACGTACCTGGGAACTCAAATAGCATCTTTGTGCGTGTTTGTTTGTTTCTAAATCTTGCCCATACATTATGAATAAGGTAGTTTGAGGTAGATAGTAACAACGTTTAAAATAATTGTCGAAATATATATTTTTACAAAAGTACCAGTTAACAAATGAGACTTTTTCCTTACCTTTCTTATGGACGAAATGAAGTTATGGAAATAGAACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N0X2	Sperm-associated antigen 16 protein OS=Homo sapiens OX=9606 GN=SPAG16 PE=1 SV=2
Q8K450	Sperm-associated antigen 16 protein OS=Mus musculus OX=10090 GN=Spag16 PE=1 SV=1
P93107	Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii OX=3055 GN=PF20 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005097 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050995 all species →	Family	WD repeat and F-box domain-containing protein	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14604 all species →	WD40 REPEAT PF20	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035082 all species →	Biological Process	axoneme assembly	Interproscan
GO:1990716 all species →	Cellular Component	axonemal central apparatus	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24735	SPAG16; sperm-associated antigen 16 protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.