Gene detail

Detailed information of HSymV2.0_g13.22453_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_13:8225995...8229150
NR annotation: XP_047142501.1, CDP-diacylglycerol--inositol 3-phosphatidyltransferase [Hydra vulgaris]
Species Hydractinia symbiolongicarpus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70500	CDP-diacylglycerol--inositol 3-phosphatidyltransferase OS=Rattus norvegicus OX=10116 GN=Cdipt PE=1 SV=1
Q8VDP6	CDP-diacylglycerol--inositol 3-phosphatidyltransferase OS=Mus musculus OX=10090 GN=Cdipt PE=1 SV=1
O14735	CDP-diacylglycerol--inositol 3-phosphatidyltransferase OS=Homo sapiens OX=9606 GN=CDIPT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001894 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01066 all species →	CDP-OH_P_transf	CDP-alcohol phosphatidyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014387 all species →	Family	CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote	Interproscan
IPR000462 all species →	Family	CDP-alcohol phosphatidyltransferase	Interproscan
IPR048254 all species →	Conserved_site	CDP-alcohol phosphatidyltransferase, conserved site	Interproscan
IPR043130 all species →	Homologous_superfamily	CDP-alcohol phosphatidyltransferase, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15362 all species →	PHOSPHATIDYLINOSITOL SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008654 all species →	Biological Process	phospholipid biosynthetic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016780 all species →	Molecular Function	phosphotransferase activity, for other substituted phosphate groups	Interproscan
GO:0003881 all species →	Molecular Function	CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006661 all species →	Biological Process	phosphatidylinositol biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00999	CDIPT; CDP-diacylglycerol--inositol 3-phosphatidyltransferase	EC:2.7.8.11	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of HSymV2.0_g13.22453_t1 across 44 RNA-seq samples of Hydractinia symbiolongicarpus. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

44Samples

41TPM > 0

3Conditions

94.2Max TPM

42.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Whole embryo	36	34	46.69	94.16
Whole embryo · Triptolide 20 uM	4	3	22.65	44.47
Whole embryo · DMSO 0.5%	4	4	19.56	26.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR24482141	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	94.16
SRR24482144	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	89.77
SRR24482137	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	85.36
SRR24482140	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	84.43
SRR24482139	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	84.03
SRR24482145	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	79.77
SRR24482138	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	79.05
SRR24482174	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	75.80
SRR24482135	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	75.42
SRR24482143	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	72.76
SRR24482173	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	71.81
SRR24482136	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	71.53
SRR24482142	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	68.27
SRR24482172	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	67.45
SRR24482134	Whole embryo	Whole embryo	5 hpf	not recorded	SRP436676	63.68
SRR24482175	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	63.37
SRR24482171	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	49.18
SRR24482176	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	43.31
SRR24482160	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	36.76
SRR24482133	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	33.86
SRR24482159	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	32.65
SRR24482169	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	29.84
SRR24482157	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	28.12
SRR24482155	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	23.58
SRR24482158	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	21.89
SRR24482170	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	21.88
SRR24482156	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	20.11
SRR24482162	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	18.85
SRR24482168	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	18.77
SRR24482167	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	17.79
SRR24482163	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	16.11
SRR24482166	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	15.39
SRR24482165	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	14.81
SRR24482161	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	11.24
SRR24482153	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	0.00
SRR24482177	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	0.00
SRR24482149	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	44.47
SRR24482150	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	41.55
SRR24482147	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	4.58
SRR24482146	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	0.00
SRR24482152	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	26.26
SRR24482151	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	19.97
SRR24482148	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	16.00
SRR24482154	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	16.00

Source: CnidoSite RNA-seq expression matrices (HSYMB_TPM, StringTie quantification over 44 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.