Gene detail

Detailed information of HSymV2.0_g14.24097_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_14:7007685...7023455
NR annotation: XP_002156628.1, mitochondrial-processing peptidase subunit beta [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HSymV2.0_g14.24097_t1

ATGGCGTCTAAGGTGGCGAGTTGTATGTTCAGAGGTCGTACGTTTTGGAGCAAGCTATGTCGACCACAGATTTCTTTGTATTCAGTCAACAGATCACAAAGTACATTGTCAGCATATGAAGAGTCATTATATAATGTACCTGAAACAGTAGTCAGTGCCTTACCTAGTGGACTTCGAATTGCATCAGAAGATTCTGGTATTGATACTTGTACGGTTGGTGTTTGGATTGATGCTGGAAGTCGTTTTGAAAATGAAAGTAACAATGGAGTCGCACATTTTTTGGAGCACATGGCATTTAAGGGAACAAAAAATAGGTCACAATTGCAGTTAGAGCTTGAAGTGGAAAATATGGGAGCACACTTAAATGCTTATACATCACGTGAACAAACTGTTTACTATGCTAAATGCTTCAAGAAGGACTTACCAAAAGCTGTAAATATTCTTGCTGATATCATACAGCACCCTGTACTGGATGAAGGTGCAATCGAAAGAGAAAGGGGTGTTATTTTGCGTGAAATGCAGGAAGTTGACACCCAATTAGAAGAAGTAGTTTTCGATCACTTGCATGCTACTGCATATCAAGGAACACCATTAGGAATGACTATTCTTGGACCATCAAAGAATGTCAAATCAATCACGAAAGCTGATCTACAAAATTACATCGACACACATTACAGCGCACCACGTATTGTGTTGGCAGCAGCTGGTGGTATTGACCATCAACAACTTGTTAAATTAGCAGAAGAAAATTTTGGTGGATTGAAAACCACCTACAATGAAGAAGAAAAACTAAAACCATGTCGATTTACTGGCTCAGAAGTACGTGTTCGTGACGATGATATGCCCCTTGCACACATAGCGTTAACGGTGGAGGGTTGTGGGTGGTCAAGTCCTGATTACTTTACTTTAATGGTAGCCAACATGATATTTGGCAGTTGGGACAGATCTCTCGGTGGTGCAAAAAATGTTGCAGGTCCACTTGCAGCTGATGTTCACAAAAATAATTTGGCTCACAGTTACATGTCTTTTAATACCTGTTACACGGATACTGGTTTGTGGGGCGCTTACATGGTGTGTGATCGCATGAAAATTGATGACATGGTGTATGTTGCACAAAGAGAATGGATGAGGTTATGTACTAGTGTAACGGAAGCCGAAGTAAATCGAGCAAAGAACATATTGAAGACGAACATTTTGTTGCAATTTGATGGTTCTACTCCGATTTGCGAAGATATAGGAAGACAAATGCTGACTTATGGCCGCCGAATTCCGTTGCCAGAACTTAACCAGAGAATCGATATGATTGACGCCAAAACTGTTAAAGATGTTTGCACGAAATATATTTACGACAAGTGTCCTGCAGTAGCTGCAGTTGGTCCTGTCGAGCAACTTCCCGATTACAATCGTGTAAGAGGAGCGATTGAAACTAACAAAGAATGGCAGCCATTCGTAAAAAATCAATTCCCAGAAGTGTACGTACCAACTGTATTTGAAAACTATGTTGCTGATATAGAAGTAGATGGCAAACAAGTCGAATTGGCATTGTGGGATACAGCTGGACAAGAAGATTACGACAGATTGAGACCGTTATCATATCCTGACACTGATGTTATTCTTATGTGCTTTTCCATAGATTCACCAGACAGTTTAGAAAATATTCCTGAGAAATGGACTCCAGAAGTAAAACACTTCTGCCCAAATGTCCCTATTATTTTAGTTGGCAACAAAAAAGATTTGCGTAATGACGAAACTACAAAATGGGAATTACAGAAAATGAAGCAAGAGCCTGTAAAAATTGAACAGGGAAGAGAAATGGCAGAGAAAATTAATGCTTTTTCATATCTTGAATGTTCTGCTAAATCTAAAGAAGGTGTACGTGAGGTTTTTGAAACAGCAACACGGGCTGCACTTCAAGTCAAAAAGAAGAAAAAGGGAAAATGCATTCTGCTGCAAAACGACAACAAAGAAATTAAACAAGACATGGCAGCCATTCGTAAGAAATTAGTCATTGTTGGCGATGGAGCTTGTGGAAAGTCCTGCCTACTCTTTGTGTTCTCTCAAGATGAGTTTCCAGAAGTGTACGTACCAACTGTATTTGAAAACTATGTTGCTGATATAGAAGTAGATGGCAAACAAGTCGAATTGGCATTGTGGGATACAGCTGGACAAGAAGATTACGACAGATTAAGACCGTTATCATATCCTGACACTGATGTTATTCTGATGTGCTTTTCCATAGATTCCCCAGACAGTTTTGAAAATATTCCAGAGAAATGGACTCCAGAAGTAAAACATTTCTGTCCTAATGTACCTATTGTCTTAGTTGGAAATAAAAAAGATTTGCGTAATGATGAATATACAATAAGAGAATTGCAAAAAACAAAACAACAGCCTGTAAAATTCGAACAAGGAAGAGAAATGGCTGAAAAAATTAATGCGTTTTCATATCTTGAATGTTCAGCTATGTTGCGAGAAGGTGTACGTGAAGTTTTCGAAAGTGCAACACGAGCTGCGATTCAAGCAAAGAAGAAAAAAAAGGGAAGTTGCGCTGTGTTGTGA

Transcript

HSymV2.0_g14.24097_t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZ71	Mitochondrial-processing peptidase subunit beta OS=Bos taurus OX=9913 GN=PMPCB PE=2 SV=1
Q5REK3	Mitochondrial-processing peptidase subunit beta OS=Pongo abelii OX=9601 GN=PMPCB PE=2 SV=1
O75439	Mitochondrial-processing peptidase subunit beta OS=Homo sapiens OX=9606 GN=PMPCB PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005767 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00675 all species →	Peptidase_M16	Insulinase (Peptidase family M16)	Family	Interproscan
PF05193 all species →	Peptidase_M16_C	Peptidase M16 inactive domain	Domain	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050361 all species →	Family	Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase Complex	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR011765 all species →	Domain	Peptidase M16, N-terminal	Interproscan
IPR001431 all species →	Binding_site	Peptidase M16, zinc-binding site	Interproscan
IPR007863 all species →	Domain	Peptidase M16, C-terminal	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR011249 all species →	Homologous_superfamily	Metalloenzyme, LuxS/M16 peptidase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11851 all species →	METALLOPROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006627 all species →	Biological Process	protein processing involved in protein targeting to mitochondrion	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HSymV2.0_g14.24097_t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.