Gene detail

Detailed information of HSymV2.0_g15.25341_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_15:7495377...7499645
NR annotation: XP_002115072.1, hypothetical protein TRIADDRAFT_28807 [Trichoplax adhaerens]
Species Hydractinia symbiolongicarpus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

HSymV2.0_g15.25341_t1

gatagcggagagcgatgcttatggaaggttttgctatttgcctatgaaataaaaaatggcggcgtcgttgcgagaaaaagaattcaacgttgatatttttactattttaaatcatcaaaatgaacacgatggtaataataaaaaggaagatatggatgctggagtcaatgcaaaagaaatgtacaagcttaaatttgaaggtcttgtgcgaatttgttttttttagcttgctttttctgtttgctagctagctagcagctagagctacatatcctagccataatagctagctgtgagcccttatcctccttattccacgatatctaatcagctgcaatgtgacatggttacagccctttttagctggtcagctgactagctatgctatatagatgagttccagcagtgtgacgtcatttgtttactttttggcggtaaagctctagggctctggcattcagagcttgctgaagagaggttttttcctgtgcatttcttctcgcggaaacgtcattgaggttttcaactactatcgagtgtagattgatgccttctgattgaataaaaataacctcgcttcacctagcgtccccatcctttttcctgccacccaaatggaaagccaaagaacttcctgctgaaaatgtaagcaatggaattcatctagctatagctatatcatcagtcaaaggcttgactgttctgcatcagccagaggacatatccccagtagtatattgatttaggggccttcaaaaatttatcttgggccccattaacaagattttgtccgttaaggtcttcacctcttaacggatcctcccccaaaaaactgaaatgattcgctggtttacgacaatatgctcttcctactacctcgtgatgttgagactgtgctgccatcttgatgccttctaaaacattttggggttgattataatgctctgacattttcagtcaagttatagaacaataaaaaatggtttttaatggacaatatcctattatcagggcccaaaatatttttagaaggcccctttgctaaagcgcaggtaccaataggtagtagctatagctagctagctatagctatgctgatagttgtggaagtcatttttgaagcagtctgttttgcagggaattaatcaaatttaaaacatatatagctataccttccgctcccaaataagttaatctcaaaacgttcataacattattactactgaacaaaaaatcatttgtttcgcaaatcaaattgtaaaaactagaaatttaaccttaaagatagtgtgtttcccaacttcgttcagttctccaccatatcgaaatggttatatacttgttcaaacttATTTAggatatatatatttatatatactccaattgtgaccaattttgacgatgttactacgttgctcaggggtgcgctacatatatgaaaaatcggagctataggggttttaaacacgctatatatgcccctgtatatgcttttagtaactttatttcagatttagcattaaatccaacgacaaaacctgaaatgttactggcgttgacaaaaaacttccctatgagtcccctattaaaatttccctatgactcccctattaaaatttcatcattttccgacgaggaacaaagtgaggtcaaaattactttgatgtttgccgcttttcactctagctctttttcaagatagtgatcgaatttgcattcaagttttattttttatatgctctcttataaatgcaaatgggaaaaagggatatattttcttaaactatgttataagtaaagtcaatgagctatatcaggacaagatagagaaactatcacaagaacaaattcaccattaataatcatgaaatgatggtctttttaatatttcagaataaattgcataggtctaacagctaattaagaaattactaattataacctgagaaaattaaatgcagtctcaaagaaatacttaatttctaattttactaggcagagtggttgctgtacttggacattgaagtgctatatttagactctgttggctgctttttccccttattcttttagatacttggcttgaacgtttgttgaactcagtggataactatttcgtactttaaaagacaatgtttggaatcatatcaggtgcacagttgctccagttttaagtggaaaatctcaaaggaaaagaaaggttctgaaaaaagtaaaggagggtattcagaaaaaagtggagaaaatgtttgaaactgacgtagatggaagtgagacgatcaaacatattgagagtgacctatacgaacgatttcaggttcggttggagttgataaagtacatgaaaggacaagagggaagtgaatctgttgtcagcggctgctatcccttaccggaaagaaataaacttgatggacaagatgaatgtgatgccgatagtcaagaaacaaaaagctctgaaactgatgaactttccaatgatgtcccactaagaaagaagaaaaaatggtcgtacatgcctacaaaacaagacgaactggtagaaaaactggatggcgccaataagcggttgacgagactagaaaatttaacatcaacattgagctatcggatccacgaattgaaagaaaaaaatgcgtcgctgctgctaagaaatgccgaattcacaaggttaaagctggtagaacaattaggcatgaatcgatcagtacaaatggttgatgcgtccttgtttgcgagtcgctttcatacaggagatccactattgcaagaggaaaccccttgcattctagattcagcgttcatttctacgctgaaaataacagatttttgtgaaggtgtttttgcttctactaaaagggctatgttcgatgacggagatactgtgatattgaaaacgttttcaaaagattgtcgtcaaaataacattaaaaatgttgcccatgtaagtcacgagcaccggattttgaagtttattggtcggcacgaaaacctagtgagcagcattggagtcgtgcatttcgatcaatcgtattattccgtgcttcattacgttgctggttatactcttgatcgccattggaaattgggttttccagacatttcttcaacttcagtttttaagcgaattctgacaggcgttgcaagcggaattagcttcttgcatagtaagggtgtgttacacaaccatatcgttgcagacaatgtaattcttcacggacaggatttgtttcctattctgataggattcagttttgcttgtcgtgcaacatgtgttaggaacagttgcgtagatgtgatcaaactgtttccagataaagcgcatttagcaccagagttatttcagggttgtcctgtgtcgtatagtacggacatatttagttatgggaaactcctcgataactatttgaaaaatatgtctgtcatggatgacaaagcgcgagataagttggaatccttctcgatacagtgtatggattggagagcgcctcatcgattaccgcacaaatttcttttcaggagagtgggcttgcttctgacggaactagggtactagttccataagattgataggcaaagataaaaatattt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q55DU7	Probable serine/threonine-protein kinase gdt4 OS=Dictyostelium discoideum OX=44689 GN=gdt4 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR27001 all species →	OS01G0253100 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HSymV2.0_g15.25341_t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of HSymV2.0_g15.25341_t1 across 44 RNA-seq samples of Hydractinia symbiolongicarpus. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

44Samples

21TPM > 0

3Conditions

19.2Max TPM

2.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Whole embryo	36	17	2.60	19.23
Whole embryo · Triptolide 20 uM	4	0	0.00	0.00
Whole embryo · DMSO 0.5%	4	4	1.75	2.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR24482156	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	19.23
SRR24482157	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	17.28
SRR24482158	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	15.04
SRR24482159	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	12.78
SRR24482160	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	10.46
SRR24482155	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	7.93
SRR24482153	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	3.22
SRR24482133	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	2.12
SRR24482162	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	1.77
SRR24482161	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	1.65
SRR24482163	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	0.75
SRR24482134	Whole embryo	Whole embryo	5 hpf	not recorded	SRP436676	0.70
SRR24482136	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	0.37
SRR24482135	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	0.25
SRR24482166	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	0.17
SRR24482138	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	0.03
SRR24482165	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	0.02
SRR24482137	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	0.00
SRR24482139	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	0.00
SRR24482140	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	0.00
SRR24482141	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	0.00
SRR24482142	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	0.00
SRR24482143	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	0.00
SRR24482144	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	0.00
SRR24482145	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	0.00
SRR24482167	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	0.00
SRR24482168	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	0.00
SRR24482169	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	0.00
SRR24482170	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	0.00
SRR24482171	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	0.00
SRR24482172	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	0.00
SRR24482173	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	0.00
SRR24482174	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	0.00
SRR24482175	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	0.00
SRR24482176	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	0.00
SRR24482177	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	0.00
SRR24482146	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	0.00
SRR24482147	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	0.00
SRR24482149	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	0.00
SRR24482150	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	0.00
SRR24482151	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	2.32
SRR24482148	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	1.78
SRR24482154	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	1.74
SRR24482152	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	1.15

Source: CnidoSite RNA-seq expression matrices (HSYMB_TPM, StringTie quantification over 44 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.