Gene detail

Detailed information of KAL9950474.1 in Oculina patagonica

Genomic Location: chr14:3472245...3513986
NR annotation: KAJ7378684.1, hypothetical protein OS493_021988 [Desmophyllum pertusum]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G042972

ATGTGTGAAATGCGTCTGACTTCCAAGATTGAGCGCAACCGAACCTCGAGATCTGCTGAAGAAGACGTGTACCTCAAGGAAATCTTGGATATGGCAAGATTCAGAGGGACTGTGTTTGGGATTTTGGTCTGTCTGTTGGCCGCTTTGGAGTTTTATCAAACAATAGGGTTTCGTTGCGGTGAAGACCAGTTTGTTTGTGCGAATCTCACATGTATACCAGAAAATTGGCGATGTGACGGTGATGATGATTGCGGAGATAACTCAGACGAACAAAATTGCCCTGTGAAAAAGTGTGATCCTACCAGCAATTTCCAATGCAAAACTGTTGATCGCTGTATTCCCCTAAGATGGGTTTGTGATTACGACAATGATTGTGGGGACAACTCTGATGAACCACCAGATTGCGCCTCAAGAACTTGTTCAGACAATGAACATGCATGTGGCAATGGCCAGTGTATTCCAAAACGGTGGCTGTGTGACCGTGATAAGGACTGTGATGACGGTAGTGACGAGGAAGGATGTGGAACAATTTCTCCAGGTAACAAGACATGTAAAGCCAATGAGTTTACCTGCGCAAATGGCAAATGTATTACAAAGACATGGCTCTGTGATTATGACAACGACTGTGGTGATAACTCAGATGAAAGCCATTGCCCTAACATAACATGTAGTCCAACACAGTTTAGCTGTAAAAATGGACGCTGCATAAAAAGTATGTGGAAGTGTGATGGTGACAATGATTGCCAGGATAATTCAGACGAGATCAATTGCCCTACCATGGTCCCCAAATGTAAGCATTCTGAATTTCAGTGTGACGACGGCAGCTGTATCCACAAGAGTTGGAAATGCGATGGAGAAAATGATTGTAAAGATCACTCAGATGAGAAAGGATGCAATGTTACTTCCTGTAGCACCAAGGAGTTCAGTTGTACCAATGGAAGGTGTATCTATGAATATTTGAAGTGCAATGGCAACAATGACTGTTTAGACAACTCTGATGAACGGGATTGTCCTGAACCCACAAAGCCTTGCAAAGATGGTGAATTCCGATGTGGAGATTCAGACCAGTGTATTCCTGAGAGTAAAGTTTGTGATGCTATACACGACTGTGATAATAAAATGGATGAGCCTATGTCGTGTGGAATTGATGAATGTATTGATCACAATGGCCATTGCCAACAGTTCTGCAATGACACAAAAACATCTTACTTCTGCTCCTGTCGTGAAGGCTTTGAAATAGACAAGGAAGACGCAAGAGTTTGTCAAGATGTTGATGAGTGTAAAATCCCTGGAATGTGCAGCCAAGTGTGTATCAACACTAAAGGAAGTTTTAAATGTATCTGCCGAGAGGGCTACCTGATGGAGCCAGACAGACGGACCTGTAAAGCAAAAGGTGAACAAGGGTACCTCATTTTTGCAAATCGTCAAGATATTCGCCGCATCCTGTTTGACTCGTCAGACTACACAGAATTGATACCAGGGCAGCGAGGTGCCATAGCACTGGATTACGACTTTGACAGTGGATACATATTCTGGACAGATGTCATTAATGAAACAGTCAATCGTGCTAAAATGGAACCAAACCCCAAAGTTGAGGTCCTGGTCAAAATAGCCTTGGATACTCCTGATGGAATTGCTGTTGATTGGATTAACAGGAAATTATACTGGACAGACACTGGGACAGACATGATTGAGGTGGCTGATTTTGATGGCAAGAACCGGCTTGAATTGATAGCAACAGGGTTAGAGGAGCCGAGGGCAATTGTGGTACATCCTTTTCTTGGCTATATGATTTGGACTGACTGGGGCGAAACACCCAAAATTGAGAAGTGTGGAATGAACGGTGATACTACAACAAGGCAGGTTTTAATCAGCACAAACATCCTATGGCCCAATGCGCTGGCTGTAGACTACACCATAGACAGAATCTGGTGGGCAGATGCAAAACTCCACACCATTGAATCATCAGATTTGAATGGAAGAAATCGTCGAATTATCCTGAGCGAGAATATCAATCATCCATTTGCCCTGACGATATTTCAGAGCTACGTTTACTGGACAGACTGGCATCACAATGCAATCAACAAGGCCAATAAGTTCACTGGTGAAGAGCGATCAGTTGTTATGGAGAACTTGTTCTCACCTATGGATATTCATGTTCACCATCGGCAGAGACAACCAATAGGAGTGAATCCATGTCAGCCTACATCACAGTTTGGCGGATGCAGCCACATCTGTTTATTGGCCCCTAGGCAAGTGTCTGGTCCAAATGGCTATCCTAGACTTGCATATCCAGACGGTTTTTCTTGCCACTGTCCACCGGGCATTCATCTGCTTTACGATCAGAGGACCTGCAATACGACAGATGCTTTTAAATGCAAAGAAAATACTTGCCTTAATGGCGGAACCTGTGTACCCGGAAAAGAGAATAGAGAATTACCAACTTGCAAATGTACACAATATTATACAGGAAAACATTGTGAAAAGAGCCGCAACTTACCAATTCCTCCGACAGCAACCACATCTGCAACTCATTACATTCCTGGAATGCGGCAAGACCCCAAGGAAGAGGATATTGGTGTAACTGTAGGCATTTCAATAGCTGTTGTAGTGCTCATCTTAGCTCTTGGTGTTCTGGTTGGATGGCTCGTTTACAGAAGAATACAAAGACACAATCGTAGGTCAATGAACTTTGATAACCCTGTGTATAAGAAAACAACAGAATCTAATAGCTCACTGGATAGAATTAGTATACACTTTGGACATTCACATGGAAAATGCCAGTCACTATTGGGCTCATTCCGGAACGACGTAGAAAGCGAAAAAAGCGAAACTGGACGACTTGGAGAGGCCTTTGCTCATCAACCAAAGTACGGTCTCCCATTTATTAAGCCTGGAAAATTAATTCAGGTGAAAGCAATGACAGTGATTTTGTCTGAAGTTTTGTTCTCAGTTTCCAGAAGAAACGGAAAGCAAATTAAAAGTGCAGAATGCACTATTGTGATGAATGGTCCAACACAAGGAGAGACACTGTTTGTAGTAGAAGCATTGTTAAACTGTTCTAGCAAGTCACTCAAGGCACCTGATGGACATACACCACTGCCATGTGGACCTGATGAAAAAGGAGAAATCCAGGAATCTGCCCGCCATATTGGAAAAGTTTTAGAAGAAGCCAAACTTGAAATTGACGTGGAAACATACATCTGTAAAATGACTGATGCATTTGAAGGAAGTATTATTCGTTGTATGCGTCGCCTAGAAGAGCTCTTGAGACAAATGTGTCAAGCATCAAAAGCCATAGGAAACACTGAGCTGGAAAATAAGTTCGCCGAAGTGACGCGCCAGATGACGATGTCAAGAAAAGACGTGAAGGCAGCAGATGCCAAGGGATGCTTGCGCTTAAAGGGCCACAGCAACCATGCCTTTACCTTGGACGATTAG

Transcript

rna-ACROYT_G042972.t0

ATGTGTGAAATGCGTCTGACTTCCAAGATTGAGCGCAACCGAACCTCGAGATCTGCTGAAGAAGACGTGTACCTCAAGGAAATCTTGGATATGGCAAGATTCAGAGGGACTGTGTTTGGGATTTTGGTCTGTCTGTTGGCCGCTTTGGAGTTTTATCAAACAATAGGGTTTCGTTGCGGTGAAGACCAGTTTGTTTGTGCGAATCTCACATGTATACCAGAAAATTGGCGATGTGACGGTGATGATGATTGCGGAGATAACTCAGACGAACAAAATTGCCCTGTGAAAAAGTGTGATCCTACCAGCAATTTCCAATGCAAAACTGTTGATCGCTGTATTCCCCTAAGATGGGTTTGTGATTACGACAATGATTGTGGGGACAACTCTGATGAACCACCAGATTGCGCCTCAAGAACTTGTTCAGACAATGAACATGCATGTGGCAATGGCCAGTGTATTCCAAAACGGTGGCTGTGTGACCGTGATAAGGACTGTGATGACGGTAGTGACGAGGAAGGATGTGGAACAATTTCTCCAGGTAACAAGACATGTAAAGCCAATGAGTTTACCTGCGCAAATGGCAAATGTATTACAAAGACATGGCTCTGTGATTATGACAACGACTGTGGTGATAACTCAGATGAAAGCCATTGCCCTAACATAACATGTAGTCCAACACAGTTTAGCTGTAAAAATGGACGCTGCATAAAAAGTATGTGGAAGTGTGATGGTGACAATGATTGCCAGGATAATTCAGACGAGATCAATTGCCCTACCATGGTCCCCAAATGTAAGCATTCTGAATTTCAGTGTGACGACGGCAGCTGTATCCACAAGAGTTGGAAATGCGATGGAGAAAATGATTGTAAAGATCACTCAGATGAGAAAGGATGCAatgtTACTTCCTGTAGCACCAAGGAGTTCAGTTGTACCAATGGAAGGTGTATCTATGAATATTTGAAGTGCAATGGCAACAATGACTGTTTAGACAACTCTGATGAACGGGATTGTCCTGAACCCACAAAGCCTTGCAAAGATGGTGAATTCCGATGTGGAGATTCAGACCAGTGTATTCCTGAGAGTAAAGTTTGTGATGCTATACACGACTGTGATAATAAAATGGATGAGCCTATGTCGTGTGGAATTGATGAATGTATTGATCACAATGGCCATTGCCAACAGTTCTGCAATGACACAAAAACATCTTACTTCTGCTCCTGTCGTGAAGGCTTTGAAATAGACAAGGAAGACGCAAGAGTTTGTCAAGATGTTGATGAGTGTAAAATCCCTGGAATGTGCAGCCAAGTGTGTATCAACACTAAAGGAAGTTTTAAATGTATCTGCCGAGAGGGCTACCTGATGGAGCCAGACAGACGGACCTGTAAAGCAAAAGGTGAACAAGGGTACCTCATTTTTGCAAATCGTCAAGATATTCGCCGCATCCTGTTTGACTCGTCAGACTACACAGAATTGATACCAGGGCAGCGAGGTGCCATAGCACTGGATTACGACTTTGACAGTGGATACATATTCTGGACAGATGTCATTAATGAAACAGTCAATCGTGCTAAAATGGAACCAAACCCCAAAGTTGAGGTCCTGGTCAAAATAGCCTTGGATACTCCTGATGGAATTGCTGTTGATTGGATTAACAGGAAATTATACTGGACAGACACTGGGACAGACATGATTGAGGTGGCTGATTTTGATGGCAAGAACCGGCTTGAATTGATAGCAACAGGGTTAGAGGAGCCGAGGGCAATTGTGGTACATCCTTTTCTTGGCTATATGATTTGGACTGACTGGGGCGAAACACCCAAAATTGAGAAGTGTGGAATGAACGGTGATACTACAACAAGGCAGGTTTTAATCAGCACAAACATCCTATGGCCCAATGCGCTGGCTGTAGACTACACCATAGACAGAATCTGGTGGGCAGATGCAAAACTCCACACCATTGAATCATCAGATTTGAATGGAAGAAATCGTCGAATTATCCTGAGCGAGAATATCAATCATCCATTTGCCCTGACGATATTTCAGAGCTACGTTTACTGGACAGACTGGCATCACAATGCAATCAACAAGGCCAATAAGTTCACTGGTGAAGAGCGATCAGTTGTTATGGAGAACTTGTTCTCACCTATGGATATTCATGTTCACCATCGGCAGAGACAACCAATAGGAGTGAATCCATGTCAGCCTACATCACAGTTTGGCGGATGCAGCCACATCTGTTTATTGGCCCCTAGGCAAGTGTCTGGTCCAAATGGCTATCCTAGACTTGCATATCCAGACGGTTTTTCTTGCCACTGTCCACCGGGCATTCATCTGCTTTACGATCAGAGGACCTGCAATACGACAGATGCTTTTAAATGCAAAGAAAATACTTGCCTTAATGGCGGAACCTGTGTACCCGGAAAAGAGAATAGAGAATTACCAACTTGCAAATGTACACAATATTATACAGGAAAACATTGTGAAAAGAGCCGCAACTTACCAATTCCTCCGACAGCAACCACATCTGCAACTCATTACATTCCTGGAATGCGGCAAGACCCCAAGGAAGAGGATATTGGTGTAACTGTAGGCATTTCAATAGCTGTTGTAGTGCTCATCTTAGCTCTTGGTGTTCTGGTTGGATGGCTCGTTTACAGAAGAATACAAAGACACAATCGTAGGTCAATGAACTTTGATAACCCTGTGTATAAGAAAACAACAGAATCTAATAGCTCACTGGATAGAATTAGTATACACTTTGGACATTCACATGGAAAATGCCAGTCACTATTGGGCTCATTCCGGAACGACGTAGAAAGCGAAAAAAGCGAAACTGGACGACTTGGAGAGGCCTTTGCTCATCAACCAAAGTACGGTCTCCCATTTATTAAGCCTGGAAAATTAATTCAGgTGAAAGCAATGACAGTGATTTTGTCTGAAGTTTTGTTCTCAGTTTCCAGAAGAAACGGAAAGCAAATTAAAAgtgcagaatgcactattgtgatgAATGGTCCAACACAAGGAGAGACACTGTTTGTAGTAGAAGCATTGTTAAACTGTTCTAGCAAGTCACTCAAGGCACCTGATGGACATACACCACTGCCATGTGGACCTGATGAAAAAGGAGAAATCCAGGAATCTGCCCGCCATATTGGAAAAGTTTTAGAAGAAGCCAAACTTGAAATTGACGTGGAAACATACATCTGTAAAATGACTGATGCATTTGAAGGAAGTATTATTCGTTGTATGCGTCGCCTAGAAGAGCTCTTGAGACAAATGTGTCAAGCATCAAAAGCCATAGGAAACACTGAGCTGGAAAATAAGTTCGCCGAAGTGACGCGCCAGATGACGATGTCAAGAAAAGACGTGAAGGCAGCAGATGCCAAGGGATGCTTGCGCTTAAAGGGCCACAGCAACCATGCCTTTACCTTGGACGATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35951	Low-density lipoprotein receptor OS=Mus musculus OX=10090 GN=Ldlr PE=1 SV=2
P35950	Low-density lipoprotein receptor OS=Cricetulus griseus OX=10029 GN=LDLR PE=3 SV=2
Q28832	Low-density lipoprotein receptor (Fragment) OS=Sus scrofa OX=9823 GN=LDLR PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000278 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF08148 all species →	DSHCT	DSHCT (NUC185) domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR050685 all species →	Family	Low-density lipoprotein receptor	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR012961 all species →	Domain	ATP-dependent RNA helicase Ski2/MTR4, C-terminal	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270 all species →	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20053	VLDLR; very low-density lipoprotein receptor	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.