Gene detail

Detailed information of KAL9950762.1 in Oculina patagonica

Genomic Location: chr14:7648743...7667294
NR annotation: XP_020624882.1, EF-hand calcium-binding domain-containing protein 7-like isoform X1 [Orbicella faveolata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-ACROYT_G043319.t0

GTTTGGGACAAAATGGCGCTTTGCATTCAAAGAACGAGAACCATAATCGCAGATTTAAAGACTAGCTAAAGGAGATTCCTTTTAAACTAAATCGTTTCAACAATGTCAGAGATAAAGCGGGTGAAGCCAGTCAGGAAGTCTTCCACTTCTAGTATTTCATCGAGAGCGTCGAATGTTTCCTTCTCGGAGAAGGTTCGTCGTGAGTCGACAGCCAAATTCGACAACTTCATGAAGGAATGTCGTGCGGCTTACTTGGCTGTTTTAAGCAGCACAACCGAGAAAATTACATCCATTGATGAATTGATACTAGCCCTTCAGTTTGGTGGAAGAAATCCTTCAATGAAGTTTGTACAGAAATATTGGAGACATAACACAGACAGCATATCATACAATGATTTTTGTGACATCATGAGGAAAGAAAAACCTCTTAATAAGGACTCTATACTGAAGGCATTCAAAAGCATTGACACAAATGGTGATGGATACATAACATATGATGAGCTGTTTAGACTGTTAACCAAGCAAGGGGAAAGGATGACTAAATCTGAGGTGCAGGAAATTCTTGATGATGCTGATATAAACAATGATGGGAAACTGGATTATAATGAGTTTGCAGCCCTGCTTGTAACTACAGCAGATGATTGTAAACagaaaagcttaaaaaaactGGCAATAGCTGACGACGATACTGCTTCACAATCTACACCACATTCTTCTAGTAACAAAAGACAAAGTATAAGCAGGCAAAACATTCAGGAGCCTGACAACCTTAAGGATTGGTATAACGGAAGCAGTAAGGGTAGTTTTTTTATTGATGGAGATGGTAACATAACCAGTCATCAGTTCAAATTGCATCTTACAAAGGATTCTGATGTCTTCGTAACTATCCAACCCACAGCTAATAAGAAAGCTGCAGATAAACTAAAAGCGACAGACATGGCAGTGTTCTGTGTGGACAAGAATTCAGAGCTGGTTGCATTTACAGAGTCCAAGCTTGGGCCAAAATATTGTTTTCACTGTGAGTTAGGAAGAGGAACATACAGCTTAATTACCTTCACAACTGGCTGTCGACTTTCTGTCAGGAAGTCTACACCTGGCAAAAAAGCCAACCTTACTATAGGCTCTGGAGAAAATATCAAGCTTAGCAAGATGTTTAGGGAAGCTTTAGCTGATATCTTTGACCGATGTGACCTTGATGGCAATGGATTCTTAAGTCGGGAAGAATTTGACTTTTTCCAGATGAAATCTGGTGGTGAACAGTGTGATGATGATGCATGGGAAATCATGAAAGATAATTTTGAAATGAACGATGATGAGATCACTCTGAAGGGATTCCTTGACCTGAACACAATGGAAGCACAGGATGCTGAGGGTGATCCAAACGACTTATGGGTGACTCTTGAGAGCATGGGCTACAACAAATCTCTGGAGTTAGATCAGTCGTGTCCATTTTTGCTGGAGGTTTTTTCTAACAAGTGCAGGCCAACTCTACAAGTGAATTCAATACAAGAGAACAGAAGTGAAGTTGTTGAAAACGCTGTAGTGTCTTCAGTGCTAAACAACATCTCCAGAAAGGAGAATGTACGAGGAATGAGAGATCTTATTTTGTACAAATATGAGACCGCCATCAGAGTCACACTGGTGCTACGGAATTTGTCCCACAGCGACGTTGTTGTCAGAGTGGATTGTAGCAGCAGTAAGAACTGTATAAGCCACCGAGGTGATCTGGACTACACAATGAAGTTAGATGCTAACAGCACAGAGgTTGCTCACCATTTTGTGCCTCAGGACGCGCGGAGGGAGTGGTCTGTGAAGCACTCCTTGACAATCGAACAGTGATCCTCTCCATGTTAACTATACTCGATTTACACAAGTTGTAAATGATATGTCTGAAAAGAAATTGCAACGAAGACAATGAAATATACGGACATTCCTTCTGACACCACAACTACGACTGCTGCAAATAATATTAAATACACAAAAGAAACTGTACTCCAAAACAAAGATTTCGTATGATTGAAAGAATAGGCAAGAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8K855	EF-hand calcium-binding domain-containing protein 7 OS=Homo sapiens OX=9606 GN=EFCAB7 PE=1 SV=1
Q6DCF6	EF-hand calcium-binding domain-containing protein 7 OS=Xenopus laevis OX=8355 GN=efcab7 PE=2 SV=1
Q8VDY4	EF-hand calcium-binding domain-containing protein 7 OS=Mus musculus OX=10090 GN=Efcab7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005339 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF08356 all species →	EF_assoc_2	EF hand associated	Family	Interproscan
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR052266 all species →	Family	Mitochondrial Rho GTPase/EF-hand domain-containing protein	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR013567 all species →	Domain	EF hand associated, type-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46819 all species →	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0060170 all species →	Cellular Component	ciliary membrane	Interproscan
GO:0098797 all species →	Cellular Component	plasma membrane protein complex	Interproscan
GO:1903569 all species →	Biological Process	positive regulation of protein localization to ciliary membrane	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23852	EFCAB7; EF-hand calcium-binding domain-containing protein 7	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.