Gene detail

Detailed information of KAL9951236.1 in Oculina patagonica

Genomic Location: chr14:14524502...14532423
NR annotation: KAJ7386435.1, hypothetical protein OS493_008563 [Desmophyllum pertusum]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-ACROYT_G043861.t1

ATGGCCGTAGATAAGGTGATTGCTGTGCGGTCACTTCTTTTGTTATTAACATTGGTCTCGATAACATTTTCCAAATCAGAAAATCCTGATAAACGAAgaaatgttttggttttgattgGAGACGATGTTGGTTTCGAAACCCAGGTGTACAATAACACGGTTTGCAGAACTCCAAACATAAACGCTTTGGCAAAACGCAGTGTGACTTTCAGAAACGCCTTCACATCCGTCAGTAGCTGTTCCCCTAGCAGGTCATCCATCTTAACAGGTCTTCCCCAACATCAGAATGGTATGTATGGCCTTCATCATACATTCCATCACTTCAACTCCTTTGATGCAGTCAGGAGCCTTCCTTTGGTGTTACAGAAGGAAAATGTGCGAACTGGAATCATTGGCAAGAAACATGTAGGACCTGAATCAGTTTATCCATTTGAATTTTCATACACAGAACTGAACTGTAATCTTCTTCAGTGTGGCCGTAATATCACTCACATGAAAGACCTTGCTCGCAAGTTCTTTCAAGGATCACAGAATGACTCCCGGCCATTCTTGTTGTATATTGGATTCTTTGATGCGCATCGCTGTGGAATAACACAGAAATATGGAGAATTTTGTGAGAAGTTTGGAAATGGTGAGCCAGGTATGGGGCTAATACCAGATTGGAAACCACTACACTACTCCCCTGAGGAGGTTATGGTGCCATATTTTATACAGGACACGCCAGCAGCGCGGCAAGAGATTGCTAACCAGTACACGTCTGTCAGCCGTCTTGATCAGGGAATAGGGCTGATACTAAAAGAACTTCGCCAGGCAGGCTTTGAAGAGAACACGCTGGTTATTTTTAGCTCTGATAATGGGATCCCTTTTCCTGGTGCAAAGACCAACTTATATCACCCTGGTATGGCTGAGCCCTATCTTGTCTCGTCTCCTTATGCCCCTGAACGCTGGGGTCACCTAAGTGACGCTATGGTAAGCCTACTGGATATAGTGCCTACTGTACTGGATTGGTTTAAAATTGATTACCCCTCTTACAAGTTGTTTGGGCCCAAACATGTGAAGCTGACTGGTAAATCTGTATTACCAGTGTTACATCAAGAACCACAGTCAGGATGGGATACAGCTTTTGCCAGTCACAACTTACACGAAGCCACAATGTACTATCCAATGAGGGTATTGCAGaagaaaaatttcaaacttGTTCACAACCTTGCTTACAAAATGCCGTATCCCATTGCCGTGGATATTTTTACATCCTACACATATCAGGACCTTTTGAATCGCACACGAGAGGGGAGACCCACGGGATGGTTTCGTACACTAAAGCAGTATTATTACCGAACACAGTGGGAACTGTATGACTTGAGTGCTGACCCTGAAGAGCTGGCAAACCTGATTGACAAACCGGCTTATCAGGAAGTGGTGAAAGAGCTACGTGATAAGCTGTTGGCTTGGCAAAAGACAACAGATGATCATTGGATTTGCACCCCGGGAGGGGTCCTGGTGGGAGAAGTTTGTCAGTCTATGGATAATGACCTGTGATGGACGTCTTTTCTCAAAAACCCtcgcactttgtaataattTTAATCTTCTTGATATTTATTGATTGCAAACATTAGAATAAATAGAACTGCGATATTCTCAGAATCTCTCGAAGTTTAACTTTTAGTGTGTATCTTAAACTGtaattaattaataacaaaTACCATGCAAATTGATTTTGTCAAGTTTAATATTCCTCGCCAAAGTATAATTCCAAGTAAGAAATTATGCAAGGCGGCAACTGGTGTTCTTATTTTTTGGCAAATCGTAATCCTGTCGTTAGATCCGCGCAATACGTGAAAGAGAAAATTAACATGTACCGGAAGTAAACCTTTTTGCTAGTTGATACGTATCTATAATTAATTCGAAAAAATTAATGTATATACATATCTATAGTTAATATATATCACATAAGTCCTGAAAATGGGTCCGCCTAGGTTAGTTTCTCTCAACATGTGACATTGACCTTAACGAATGAGTATTGTATTCTGTGCTGAATTACGGTTTGTCTGGTTTCAATTAGACTGATTTCTACTGTAAAGATTTCGAAACCATTTGGTAACTTTCTTATTGTTAAGATCTAGTTGACTGGATCTGAGGGATTGAGTAGTATAGTGGGAATTGCGCTTTCAATGTAGTGGGACTATAAAattactttcaatttttttttagtttctttgAAAGGATCCCCGCCCTTGTTAGTTCCTTCGGAGTGAGTCTGATCCTTCTAATTTGAACATTACAGTTTATTTTATATGTATCGGTAGGGTTCTTTTACGTAGCAGATATTATACATTTTATAGGAGGTAGATTTTACAATACGCTAATTTTACAGTCAGTGAGATGTAATAAAGAGGTATTACTATGTTATACAGATAATTTTTTAATTGTCACAGTGTTAGTAAGTATTATATTTAGTCTTCATTTAACGAGCCACGTAGCACTTAGAAATGTAAAGTTAAAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51688	N-sulphoglucosamine sulphohydrolase OS=Homo sapiens OX=9606 GN=SGSH PE=1 SV=1
P50430	Arylsulfatase B OS=Rattus norvegicus OX=10116 GN=Arsb PE=2 SV=2
P50429	Arylsulfatase B OS=Mus musculus OX=10090 GN=Arsb PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004503 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16347 all species →	SGSH_C	N-sulphoglucosamine sulphohydrolase, C-terminal	Family	Interproscan
PF00884 all species →	Sulfatase	Sulfatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR032506 all species →	Domain	N-sulphoglucosamine sulphohydrolase, C-terminal	Interproscan
IPR024607 all species →	Conserved_site	Sulfatase, conserved site	Interproscan
IPR000917 all species →	Domain	Sulfatase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43108 all species →	N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005539 all species →	Molecular Function	glycosaminoglycan binding	Interproscan
GO:0006027 all species →	Biological Process	glycosaminoglycan catabolic process	Interproscan
GO:0008449 all species →	Molecular Function	N-acetylglucosamine-6-sulfatase activity	Interproscan
GO:0016250 all species →	Molecular Function	N-sulfoglucosamine sulfohydrolase activity	Interproscan
GO:0030200 all species →	Biological Process	heparan sulfate proteoglycan catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01565	SGSH; N-sulfoglucosamine sulfohydrolase	EC:3.10.1.1	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.