Gene detail

Detailed information of KAL9952886.1 in Oculina patagonica

Genomic Location: chr13:11004781...11020648
NR annotation: KAJ7384788.1, E3 ubiquitin-protein ligase pellino 1 [Desmophyllum pertusum]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-ACROYT_G040212.t0

ccctccccacgAACATAAACTAATTCCTTGCTGGACTTGCCCAAGCTTATCCCTCGGGAGTCCCTTTCATACATTCGGGTCTCGTTGAAGACCATGTCATTTCCTTTACACGACTGTAAATTGGCGGATCTATGACAGAAACTGCAGAAGAGTTTCTTGATGGGGATGGGAAAAATGGGCAACCTAAGGTTAAACGACGCAAAGCAATAGAAGATGTAGGTATGACATCGAGTGATAGGGATGAAAAAGACACTATTTACGGTGCGCTTGTGGTTCTTGGTTACAATGGTTCTCTGCCCGATGGAGGAGAACTCAAGCCTCGTCACCGAAGCTCATTTATTTTGAGAAAGAAGGGATCCCCCTCAGGAGTGCAACCCTACAAATTGCACCTGGCTTCTTCAAACACTGGAATGCAGATTGTTAATTCAGAAGCCCACAGCGTATCATACACTTTATCCCGTGGCAATGCAGTTGTTGTTGAATACAGTAGAGATCCCACAACTGATATGTTTCAGATTGGCCGTTCAGCTGATTCTAAAATTGACTTTGTTGTATCGGACACAGTTCCTGGCAATAAGCGTTCTGAAGCCAATCAGGATGCGCCAAAAAGCACCATTTCCAGATACTCCTGCCGAATTGTTGTTGATAGAAGTCCACCTTACACAGCAAGAGTGTTTGCTGCTGGGTTTGACAAATCTAGTAATATATTTTTAGGGGAAAAAGCACCAAAGTGGCAAAATGAAGAGAACATGATGGACGGCTTAACAACAAATGGAGTCCTTCTAATGAATCCTAAGGGTGGCCCATCATGTCAACCAACAATATGGCGTGAAATATCAGTATGCGGCAATGTATATGGACTTCGTAAAACACGGTCCACAACTGAGAAAGGGAAGACTgTGGAGGGAGAGTCCAATGTTTTGCTTGATGGATCATTAATTGATCTTTGTGGAGCTGTTTTACTATGGCGGTCTGCTGAAGCTCTTCAGGAAATGGCTACTTTAGAAACCATTGATAAAATGAGGGAGGGCCTAAATGCCTCCAGACCACAATGTCCTGTAGGACTTACAACATTGAAATTTCCAAGCCAGCTAGAGCCTGGCAGCAGTGCATCCAGTACTCAGCCGTATGTATACCTCAAATGTGGCCATGTACATGGGCTTCACTCATGGAATTCACCAGATAGAAGTGCCGCTGATAAACGAACATGTCCAGTGTGTTTGCAGGCTAGCAGTTATGTTCCATTGAGTCTTGGAAGAGAACCAGCATTCTACCAAGGAGAAACTTCAGCAACACATGCTTTTGTACCATGTGGACATGTTTGTTCTGAAGAAACAGTGAGGTTCTGGCAGCAGGTACCCATTCCACACGGATGTGACGCATTCCAGGCAATTTGTCCCTTCTGTGCCCAGCCATTGGAGGGTGAAGATGGTTTTGTCAAACTCATATACTCAACAGATGAATAACtttgtaaataaatttaaattagtgTACAGCTTTACTGAAACTATTGACATAAATTTATCATAATTATTAGTTACCACTGAcaacaaattaatttatttgtgaATAGTTTAAGGGTAAATATCTTGTCACAGTTATCCCCGTTCCCTGTATAGGCATTGCCGATGAAACTGCTGGTCATATTTTCATAGAAGGCATGTAGTTTAAAATTTGGGTTTTGTTTGCCACTTTACTCGAAATTGCACACAGTTGTCCAGCTTTGGAGAAGTTTCGTTTTTTTCTGGTgtgaaaaacagttttattgataGTTTTAAAACAGTATATGGGCACGTCGACATCCAGAGATCTGGGTTCTAGTCCTTGTGTTCTGTTCTTTGTCAAAACAATTTACTCTTGCACTTCCCCCTCCCCACTAGGTCTAAACCTGCAATGGGCTTGCATCCATTTAGGGGGAAAGGTAGTTGCTGGATTTTTTTGCCAATAGTTTTGTTCTGAATCTTAAGTTGGTTTGAATTACTTAGCTTGCATGCCACAATAAGAAACAATTTAACCTCAGTCTCGATTTTTACTCAAAATATGATATATTATTGCATgatctaattttaaaataacgTTTACTTATTTAGATTTTCGTAATTTTTTATATGATACTCTTGATTCAGggatcattttttttcttgccaacTTGTCTTCCTCGGCAAAGCATAATTTATTATTGTATGGTATATACATTTATCACCAGAAGCTCGTAATGGCATTGAAATGtggaatataaaaaaaagattGCACCTCACTTTTACTTTTTGCTGATTACTCCCTTGAGAAATGGGTGGGAACAAACAGAAGTGGTAAAGAGCGAGACTGAACATTTGTTCCAATATGGTGCTTTATAGAATCAGTGTTCCACATTTCAAACCCTTATATTATGATATACATTTGTACGCAGGTTTTTGCTTTGTAACAAAGATCTATCAGGTCTTTTGCTGTGTTTCCATAGAAACCATTTTTGTACTGCTCTTAGCAGGAGTGTGAATACTGGCGCAGGTAGAGCCAAACTGAGGTTCAAAAGAGGAGTAAATGAATATTAGTTACTTTGGTATACCATGTAGCAAGCTTTTACAGATCCGGAAACTAAAGGCTGTGATTTTGAGATGCTGTCTTACAATTAGAATCGTTAGTCTGAAAAGAATTATGTGATGATGCGTAGCCCTGCTGCTTAGGTCTCTGATTTTGTTGTCGCtcagttttgaattttcaaatgCAAGTTATAACCAGAGATATGGCGACTACGTCATCGGTATGATAATTTTTCGGGTTGACCCCGGTCTAGGCAGGGGTTGATTTTTTGTAATTCAGTGATCCACTTTTAAACTTTGAAATGATAAACGGCTTGTAGataaatgattttctttttttaccacCCTTATTACAATTGGTCTTCAGCGTGTAATAAATTTAATCGATCAAGGTATATATaataaagatttaaaaaaagaacaaccGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C669	E3 ubiquitin-protein ligase pellino homolog 1 OS=Mus musculus OX=10090 GN=Peli1 PE=1 SV=2
Q96FA3	E3 ubiquitin-protein ligase pellino homolog 1 OS=Homo sapiens OX=9606 GN=PELI1 PE=1 SV=2
Q8BST6	E3 ubiquitin-protein ligase pellino homolog 2 OS=Mus musculus OX=10090 GN=Peli2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004334 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04710 all species →	Pellino_FHA	Pellino, FHA domain	Domain	Interproscan
PF20723 all species →	Pellino_RING	Pellino, RING domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006800 all species →	Family	Pellino family	Interproscan
IPR048334 all species →	Domain	Pellino, FHA domain	Interproscan
IPR048335 all species →	Domain	Pellino, RING domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12098 all species →	E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0008592 all species →	Biological Process	regulation of Toll signaling pathway	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11964	PELI; pellino	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.