Gene detail

Detailed information of KAL9953637.1 in Oculina patagonica

Genomic Location: chr13:21536803...21539767
NR annotation: KAJ7374293.1, hypothetical protein OS493_007378 [Desmophyllum pertusum]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G041087

ATGTCCGTGGATGCGAGGATTTTGGATTCCTTGAGGCCCATATTCCCGCAGCTGAATGACCGCGTTTTGTCCATGTGCATCAGGAATGTGCAAGAAACCGTGGGAAGCGATCCAGCGACGATCATACCGGGATGCATCGATATGCTCTTGAGCGGAACTTACAATGAAGTGAATTTACCAGAGGAAAGAGCACTCCCTTCGACGGCTCCGTTACGAGAAGATGTAGTAAATTTTCCCTTTTTAAACAAAGATGACGATGTGGTTATTGTGGAGAAAGTAAGATTCGGGAACCCGCCTCCGACTGTCATCATTGATGATCCCGGAATTCCTGTTTTATACAACACGCCGTCCATCTTGAATAATTCACCGACGCCATCTCCCCGCTCACAAAACGCTGGGAATACAATTGCAGATCCGAGAAGAAGCTTATCGTTTGGAAGGGAAACACCTCCTTCGGCTGTTACACCACCTTCTTCTTCGACCAACACGGTTAGTCAACAATTACCCAGAGTTGAAGTTCCAACTGTTCCTGTTGAACCTGTGTTAGACCCGATGAAAGAAGCACTGAAAAACCTTCGTTGTTTATTCCCCGACGTGGAAGACAATTATCTTCAGAGTTTGCTCGATAAGTGGTCTCATATCCCTCTGAATGAGGCCGTTAACAATGCTTGTAATGAACTCCTGGAGAACAAAGATTATCCTAAAAAATCATCCATTTTCACACCTACCAAGAGTCCTGGAGAATCCCAGAAAGAAAAGGACTACCTGAAAGACTTTTCTAGTTTAGTTTCAAGAAAATATAGTGAACAGTGCTTACAGTTACTTCAAAATGAATTCAGGATCGTTCCTGTAAAATACATAAGGATAGCTTTGTCCAAGTTTAGAGGTCATTATGCACCAAGCAGGAGGTATTTGCAAGAACAGCTCCGTGTATCTATGGTTTCTAGTGCAACTGCCACATCGACTACCACTTCTGCACCTCAAAACACAAGTGCACTGCCATCAACAGTGGAGAAAACCAACACAACTACTGACCTCGGCTTTGATAAGCCACCTAAAATACGACTCCTTAAATGTGGGCGTTCACCAGTGTTCAAGACTACACCCCTGTCACAACTTGATGTGGAACTTCAGAGGGAGCTTGAATTTGTGAAAAAATATGAGCTGTCTAAAACAGAGGAGAGAGATCGAATACTTGCCTTTACCTTAAATGATGAACAGTACGAAGAAGAAGGACAAAAGATTGAGTGTGGTTGTTGCTATGGAGATGCAGCTTTTGAAGACATGGTTCAATGCCTGGAGGGTCATCTGTTTTGTGCAAATTGTCTGATGAACTATGCAAAGGAGGCCACCTTTGGTCAAGGCAAAGCAACTCTGGTCTGCATGAGTGATGGCTGCGATGGTACATTTCCAATGAGTCAGCTTAGAAAGGCCTTACCCACCAACATCCTGGAAAAATATGAAGACCGTGTGCAAGAAGAATCCTTGTCGCTTGCCCAGATGGAAGATCTTGTGCGATGCCCATCTTGTGATTTTGCTGCAATATTACCACCAGAAGATAAAGTTTTCAAATGTCAGAATTCCTCTTGCGCCAAAGAAACTTGCCGCTACTGCAAAGAGGACTGGTCAGAACATTTTGGTTTAAAATGCAATGAGGTTGAAAAGTCAGCGCAAAAAGATGTCAGGCTCTTGTATGAAGAAAAGATGACGATGGCAAAAATACGAAAGTGCCCCAAGTGTGGATGCGAGTTTACAAAATCGGATGGCTGCAACAAAATGACCTGTCGATGTGGAGCGACAATGTGTTATGTCTGTCGCAAGCCAAATATCGGATACAACCACTTCTGTCAGCACCCTAAGGATCCAGGAAAGCCTTGTGCGAAATGCAAAAGCTGTTCCTTGTGGACTGATCCTTCCGAAGATGACAACCGTGCAGTCAAGGAAATAGAGAAGGAGGCCATGGAAGCCAAGAGGAAGTTTGAAGCAGAAATGGAGGCATCAGGAGACAACCCTGCTAAAAAGGTGAAGACAGGCTGA

Transcript

rna-ACROYT_G041087.t0

ctcgaggtacgagaatgatTTCGCGCGATTTCGCGCCGATTTTGAAACAAAGTGCTATTCTTGCATGATATTTCACGCTCAAATCTCGAGTATTTATTAGAGTTGAGCGAAATGTCCGTGGATGCGAGGATTTTGGATTCCTTGAGGCCCATATTCCCGCAGCTGAATGACCGCGTTTTGTCCATGTGCATCAGGAATGTGCAAGAAACCGTGGGAAGCGATCCAGCGACGATCATACCGGGATGCATCGATATGCTCTTGAGCGGAACTTACAATGAAGTGAATTTACCAGAGGAAAGAGCACTCCCTTCGACGGCTCCGTTACGAGAAGATGTAGTaaattttccctttttaaaCAAAGATGACGATGTGGTTATTGTGGAGAAAGTAAGATTCGGGAACCCGCCTCCGACTGTCATCATTGATGATCCCGGAATTCCTGTTTTATACAACACGCCGTCCATCTTGAATAATTCACCGACGCCATCTCCCCGCTCACAAAACGCTGGGAATACAATTGCAGATCCGAGAAGAAGCTTATCGTTTGGAAGGGAAACACCTCCTTCGGCTGTTACACCACCTTCTTCTTCGACCAACACGGTTAGTCAACAATTACCCAGAGTTGAAGTTCCAACTGTTCCTGTTGAACCTGTGTTAGACCCGATGAAAGAAGCACTGAAAAACCTTCGTTGTTTATTCCCCGACGTGGAAGACAATTATCTTCAGAGTTTGCTCGATAAGTGGTCTCATATCCCTCTGAATGAGGCCGTTAACAATGCTTGTAATGAACTCCTGGAGAACAAAGATTATCCTAAAAAATCATCCATTTTCACACCTACCAAGAGTCCTGGAGAATCCCAGAAAGAAAAGGACTACCTGAAAGACTTTTCTAGTTTAGTTTCAAGAAAATATAGTGAACAGTGCTTACAGTTACTTCAAAATGAATTCAGGATCGTTCCTGTAAAATACATAAGGATAGCTTTGTCCAAGTTTAGAGGTCATTATGCACCAAGCAGGAGGTATTTGCAAGAACAGCTCCGTGTATCTATGGTTTCTAGTGCAACTGCCACATCGACTACCACTTCTGCACCTCAAAACACAAGTGCACTGCCATCAACAGTGGAGAAAACCAACACAACTACTGACCTCGGCTTTGATAAGCCACCTAAAATACGACTCCTTAAATGTGGGCGTTCACCAGTGTTCAAGACTACACCCCTGTCACAACTTGATGTGGAACTTCAGAGGGAGCTTGAATTTGTGAAAAAATATGAGCTGTCTAAAACAGAGGAGAGAGATCGAATACTTGCCTTTACCTTAAATGATGAACAGTACGAAGAAGAAGGACAAAAGATTGAGTGTGGTTGTTGCTATGGAGATGCAGCTTTTGAAGACATGGTTCAATGCCTGGAGGGTCATCTGTTTTGTGCAAATTGTCTGATGAACTATGCAAAGGAGGCCACCTTTGGTCAAGGCAAAGCAACTCTGGTCTGCATGAGTGATGGCTGCGATGGTACATTTCCAATGAGTCAGCTTAGAAAGGCCTTACCCACCAACATCCTGGAAAAATATGAAGACCGTGTGCAAGAAGAATCCTTGTCGCTTGCCCAGATGGAAGATCTTGTGCGATGCCCATCTTGTGATTTTGCTGCAATATTACCACCAGAAGATAAAGTTTTCAAATGTCAGAATTCCTCTTGCGCCAAAGAAACTTGCCGCTACTGCAAAGAGGACTGGTCAGAACATTTTGGTTTAAAATGCAATGAGGTTGAAAAGTCAGCGCAAAAAGATGTCAGGCTCTTGTATGAAGAAAAGATGACGATGGCAAAAATACGAAAGTGCCCCAAGTGTGGATGCGAGTTTACAAAATCGGATGGCTGCAACAAAATGACCTGTCGATGTGGAGCGACAATGTGTTATGTCTGTCGCAAGCCAAATATCGGATACAACCACTTCTGTCAGCACCCTAAGGATCCAGGAAAGCCTTGTGCGAAATGCAAAAGCTGTTCCTTGTGGACTGATCCTTCCGAAGATGACAACCGTGCAGTCAAGGAAATAGAGAAGGAGGCCATGGAAGCCAAGAGGAAGTTTGAAGCAGAAATGGAGGCATCAGGAGACAACCCTGCTAAAAAGGTGAAGACAGGCTGAGAAGTTCAATTTTTATGATCATGTACACATTTGCAAAGCCGTAGACAAAGGCAGAGTTTTTGTTTGGTTGTTTAACATGTAAATGCCAAAAACAAATTGGTCATTGTCCAAtcacaacaaaatgcaaatattcAGTCAAAACACTCCTCTTATTGGTGGCCTTCACAATAACAGATTGAAATTATTAGAAGTGATTGTATAAGGGTTTCAATGGCAAGTTTTTGATGCATACAGCTGTAGAaaggataaaaaatatttaattattatttacatgtacatgtaaagggATACAAATAATTTGagtttattattccactattgcgcaaaatatgccacgttattacacagtagaacagggcaaaaatacgggcggacaaacttacggaatactggcccaaacaaagtggaaaaattagtggaataataaatcccttattcaaTGGTTTGACATATAATATGAGCGGACATTTTGTtcattgctcgtatttttcctCGCCCCACGGGGCTCCGaaaaaatactacgcaactctgttaaaccattgaataaggtgtatttacGGTTAATGAAACTGTCACTTCTTGaagataataattaaaaattagcACGAGTTttttatgagcgaatagtcaacgaggcgcagcccaATTGACTATCACTCATAGataacgagggcgagtagtctaattattttagtagaaactctaaagaacTGCAGTctaaaacctacaattttatgtacttttaagccaaaaatcacgaaaaattcaccctttaaagagcaacgcgcgcatgattgttttctatcggcaattagaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NWF9	E3 ubiquitin-protein ligase RNF216 OS=Homo sapiens OX=9606 GN=RNF216 PE=1 SV=3
P58283	E3 ubiquitin-protein ligase RNF216 OS=Mus musculus OX=10090 GN=Rnf216 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007151 (this species only)
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

No Pfam domain signature was detected for KAL9953637.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR047546 all species →	Domain	E3 ubiquitin-protein ligase RNF216, Rcat domain	Interproscan
IPR051628 all species →	Family	Linear Ubiquitination-Associated E3 Ligases	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR047545 all species →	Domain	E3 ubiquitin-protein ligase RNF216, BRcat domain	Interproscan
IPR047544 all species →	Domain	E3 ubiquitin-protein ligase RNF216, RING finger, HC subclass	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22770 all species →	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0071797 all species →	Cellular Component	LUBAC complex	Interproscan
GO:0097039 all species →	Biological Process	protein linear polyubiquitination	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11976	RNF216, TRIAD3; E3 ubiquitin-protein ligase RNF216	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.