Gene detail

Detailed information of KAL9956430.1 in Oculina patagonica

Genomic Location: chr12:18256617...18268277
NR annotation: XP_020624185.1, zinc finger protein 91-like [Orbicella faveolata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G037905

ATGGCATCGCATGAAAGGGACCATACATGTACTGATAAGATTATCCAAGAAAAACATGTTTGCCCCCACTGTACCAAGACTTACAGTTTACCTGAAGAACTGGAACTGCATATACAATCGCACGCTGTTGATAAGCCCTACAAATGTCCTCACTGCGACAAGTCTTTTAAATTAGCATCAGGTCGCAGGGTTCACATTAGAGTACATACTGGAGAGAAGCCCTACAAGTGTTCTTACTGTGACAAGTGTTTTACAGTAGCTTCTAACCTCAAACGACATAAGAGGACTCATACTGGAGAAAAACCCTACAAGTGTCCTAACTGTGACAAAAGCTTTCATGACCTTTCTCATTTGAAATCGCATAGATGTGTTCATACTAATGAGGGGACCCAACAAAGGAAACATGTCTGCCCCCATTGTACTAAGAGCTACAGATTCTCAGGACCACTAGCAGTGCACATACGAACACACACTGGCGAGAGACCCTATAAATGTCCTCACTGTGATAAGTGTTTTAAATCAATGCAATGCTGCAAAATGCATGTACGAATCCATACTGGAGAGAGACCTTACAAGTGTTCCCACTGTGACAAGAGTTTTATTACATCTTCTGGTCTGGAGAAACACAAAAGGGCTTATACTGGACGGAAACCTTACAAGTGCTCTGACTGTGACAAACGTTTTGCAACTGCTTCACGTATGGCATGGCATCGAAGAATGCATAATACTACTGATATGAGTACCCAAAGAACGAATATTTGCCCCCACTGTGCCAAGAATTGCAGATGCCCTTCAGAACTTGCAGTACATATACGAACACACACTGGGGAGACGCCGTATAAATGTCCTCACTGTGAAAAGTGTTATATGTCAGTAGAAGCTCGCAGAAGACATATAAAGAGAAGTCATAAAGAAGTATTTTTGCCTTCTGATGATGGCTCTTACAAATGTAGTCACTGCGAGAAGACATTTAAAACATCATCAGGTCGATCAAAACATGTGATACTATTACACACCCCAAGAGAGAAAGCTGTTCACCAATGTCCTTGGTGTGAGAAGCATTTTGCACTTCCTTCACTTCTGGCAACGCACAAAAGAACTCACACTGGCGAGAGACCTTACAAATGTACTCACTGTGACAAGAGGTTTATGACACAACCAGCTTGCAAGAGCCACATACGATTACACACGAGGCAGAATTTTCACCAGTGTCCGCACTGTGAAAAGAACTTTATATTCCCTAATCTTCTGGCAGATCATTTGAATGCACACTCTGGCGAGAGGCCGTACAAATGTACTCACTGTGACAAGAGGTTTATGTCAAAAGCAGTCTGTAAACAGCACATACAAATACACACAGGCGAGAATGCTCACCACTGCCCCCACTGTACGAAGTGGTTTATAAGTGCTTCACGTCTGAAAGATCATTTAAAGGTACACACAGGTGTGAAGCCTTACCAGTGTCCTCAATGCAATAACTGTTTTGCAAATAAAAACAGTCTCACAAAGCACAAGAATTATTATTGTTGCAAAAGAATCCCCAGGGATGATGCAAGGCCCAACACAAGGCAGAATTTTTACAAGTGTCCGCACTGTGAAAAGAACTTTTCATTCTATAATCTTCTGGAAGACCATTTGAATGACGTACATTCTGACGTGAGACCGTACAAATGTACTCACTGTGGCAAGAGGTTTATGACAAAATCAGTTTGTAAACAGCACATACAAATACACACAGGGGAGAATTGTCACCACTGCCCTCACTGTAAGAAGTGGTTTATAAGTGCTTCACGTCTGGCAGATCATTTAAAGGTACACACAGGTTTAAAGCCTTACCAATGTCCTCAATGCAGTAAGTGTTTTGCACGTAAAAGCGCTCTCACAATGCACAAGAATTATTATTGTTGCAAAAGAATCCCGAGGGATGGTGCAAGGCCCTACAGGTGTCCTTTTTGTGAAGCAAGATTTAATTTGGTTAGCGAACTTACACAACATAAAAGAATGCACTTTGACACCATAGAAATTACCGTTGTCGAATAA

Transcript

rna-ACROYT_G037905.t0

CGGCCATGTTTGATGTTGGTGATCGATCCTGCTTTGTGTTGTGATTTATGGAACTTATCGAGTGGTACATAGCTAGCGCAGTATTACGTTGTCTTTTGAGAAAGATCATTTTTTAGTCTTTCATCTACCACTGCAACTTCTGTTTGCCTTGGCCCCTAGAACATCCTTAGTTTGGGAAGTATTTTCAATCTAAAGCAACTCAGTAAATACACCTGACAATCTGTACTAGAAAGAAGCCTTGCAAGTTCTCTTACTGCAACAAGAGAATTTTTATTGCATCTTCAGCTTTAACAGTACCTAAAACTCACATACTAGAGAGCCTTGAGGTTTACAGCTTAACTTTCATTATGGCATCGCATGAAAGGGACCATACATGTACTGATAAGATTATCcaagaaaaacatgtttgccCCCACTGTACCAAGACTTACAGTTTACCTGAAGAACTGGAACTGCATATACAATCGCACGCTGTTGATAAGCCCTACAAATGTCCTCACTGCGACAAGTCTTTTAAATTAGCATCAGGTCGCAGGGTTCACATTAGAGTACATACTGGAGAGAAGCCCTACAAGTGTTCTTactgtgacaagtgttttacaGTAGCTTCTAACCTCAAACGACATAAGAGGACTCATACTGGAGAAAAACCCTACAAGTGTCCTAACTGTGACAAAAGCTTTCATGACCTTTCTCATTTGAAATCGCATAGATGTGTTCATACTAATGAGGGGACCCAACAAAGGAAACATGTCTGCCCCCATTGTACTAAGAGCTACAGATTCTCAGGACCACTAGCAGTGCACATACGAACACACACTGGCGAGAGACCCTATAAATGTCCTCACTGTGATAAGTGTTTTAAATCAATGCAATGCTGCAAAATGCATGTACGAATCCATACTGGAGAGAGACCTTACAAGTGTTCCCACTGTGACAAGAGTTTTATTACATCTTCTGGTCTGGAGAAACACAAAAGGGCTTATACTGGACGGAAACCTTACAAGTGCTCTGACTGTGACAAACGTTTTGCAACTGCTTCACGTATGGCATGGCATCGAAGAATGCATAATACTACTGATATGAGTACCCAAAGAACGAATATTTGCCCCCACTGTGCCAAGAATTGCAGATGCCCTTCAGAACTTGCAGTACATATACGAACACACACTGGGGAGACGCCGTATAAATGTCCTCACTGTGAAAAGTGTTATATGTCAGTAGAAGCTCGCAGAAGACATATAAAGAGAAGTCATAAAGAAGTATTTTTGCCTTCTGATGATGGCTCTTACAAATGTAGTCACTGCGAGAAGACATTTAAAACATCATCAGGTCGATCAAAACATGTGATACTATTACACACCCCAAGAGAGAAAGCTGTTCACCAATGTCCTTGGTGTGAGAAGCATTTTGCACTTCCTTCACTTCTGGCAACGCACAAAAGAACTCACACTGGCGAGAGACCTTACAAATGTACTCACTGTGACAAGAGGTTTATGACACAACCAGCTTGCAAGAGCCACATACGATTACACACGAGGCAGAATTTTCACCAGTGTCCGCACTGTGAAAAGAACTTTATATTCCCTAATCTTCTGGCAGATCATTTGAATGCACACTCTGGCGAGAGGCCGTACAAATGTACTCACTGTGACAAGAGGTTTATGTCAAAAGCAGTCTGTAAACAGCACATACAAATACACACAGGCGAGAATGCTCACCACTGCCCCCACTGTACGAAGTGGTTTATAAGTGCTTCACGTCTGAAAGATCATTTAAAGGTACACACAGGTGTGAAGCCTTACCAGTGTCCTCAATGCAATAactgttttgcaaataaaaacagtCTCACAAAGCACAAGAATTATTATTGTTGCAAAAGAATCCCCAGGGATGATGCAAGGCCCAACACAAGGCAGAATTTTTACAAGTGTCCGCACTGTGAAAAGAACTTTTCATTCTATAATCTTCTGGAAGACCATTTGAATGACGTACATTCTGACGTGAGACCGTACAAATGTACTCACTGTGGCAAGAGGTTTATGACAAAATCAGTTTGTAAACAGCACATACAAATACACACAGGGGAGAATTGTCACCACTGCCCTCACTGTAAGAAGTGGTTTATAAGTGCTTCACGTCTGGCAGATCATTTAAAGGTACACACAGGTTTAAAGCCTTACCAATGTCCTCAATGCAGTAAGTGTTTTGCACGTAAAAGCGCTCTCACAATGCACAAGAATTATTATTGTTGCAAAAGAATCCCGAGGGATGGTGCAAGGCCCTACAGGTGTCCTTTTTGTGAAGCAAGATTTAATTTGGTTAGCGAACTTACACAACATAAAAGAATGCACTTTGACACCATAGAAATTACCGTTGTCGAATAAATGGGAACCTCGCAATGCAGGTCAAACATGATTTCCATTAACATTTCTTGTCCAAGCATTGATCTGGTATGTTTTGGGTGGTTACATGCCGCCTGGATCAACAAAAAGCACCCCattttagaaagaatttgcattcaaaatgaTACTCCAGGTCAATGTTTTGACACCctgttttggctgctgatagtTTGAAACTTTCCTGCGTTTTGAATATCTTAAATCGTTCTAGGAATCGTCTCTAAAAGGGATACCCCATTCTTGATcagaatcccccccccccccggttccATGTTGTCTTCAAAACACTCAGTGTCATGTGGGGAAACTTGAATGATTTAACAGGTTTAAAATGCAAAACTAAAGATTTATCCTGGTaaaaattatttccttttttagcTAGTGAAAAACTTTTCCACCGCATCtagactgcggcgcttattacctttttgtcccaaatgcggcgcttattcgagggcggcgcttatacGGGGAcgcgcttatttgagtaaatgcggtaataaaataaacttaaccaTAACAAACATGAAATACACATCTTCCAAGAAAAGCGAACAGCCCAGGAGGTTAAAATATAGTAACAGTATTTTCATTCTATTAACGGAAGATCGGGCCAGTATACTGAAAACACGCTTCTGTTTACTTGCGCCATGCGGCAACAAATCGTTGTTCGTCTGGTTATGcatctctagtataaagacgggcacaagatgCGTTATGcggccacttttttttttttttttttttttttttttttacgcatctagacgagcttcctttcgCTATCCGTCTTTCAAGATGCATTTCAAAAAGTAGCTcatctagacgggtaactctggggacgcataaccagacgaacaacaaaatttttgctgAAGCTCGTCCAGTCGGGTAACAGTATGAAGTATGAAGACGGCCACTCCATGAGCGCGCTGGATGGTAGATGGCCATGATCGAGCCGGAGGAGGGTAGCGCTATAACTGCATcgagcgcgagtggaataaaaaagaaacacccAATATGCAAGTATAGTATTAGCTTGCAACttggtaatgaacgtttattcgtttgtctcgcgatagaatcgctttgagatgttgatcgcgacgtttcgactgcaatacggctagtcttcatcaggcgttTGTTTACGCGTCGTTATTTATGCACGtcggttcgctgtgattggtgcatttcggtcctcattattattccgacaaacagatgatgttccctcagaggtccgctttgtagttgaacggctgttgtgcataaatagcgacgcgtaaacaatggacctcatcgcctgatgaagactggcagtattgcagtcggaacgtcgcgatcaacatcttaAAGCGATTCTAtcatgagacaaacgaataaacgtccattacctatcttacaccacgatgaaaaatattcacatctttaatgacagcTTGCaacttattgcaaacttttagTACATTATGTCAAATTTATATGAATATCTATGGTTCTGTAAAGTACACCTCCTTTCTTCGGCTAGTTTATTTATCAATTCACTGTATTTTCCAGATAATTTGCACTTAATCTCTAAGTAAACTTTTAGTCCActcttttttttgtgggtttctGCGGTATTGTTTATGTTCATATGCCCGTCTCTAGAACCTGATCCtaataaaaaattgttgtcaAGACTACAAGGGTTGCTGCCCAGTTATTTCGGAAAGGCCATGTGCTCATTTGTATTGCATCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7Y7X5	Zinc finger protein 711 OS=Danio rerio OX=7955 GN=znf711 PE=1 SV=1
Q9P2Y4	Zinc finger protein 219 OS=Homo sapiens OX=9606 GN=ZNF219 PE=1 SV=2
Q6IQX8	Zinc finger protein 219 OS=Mus musculus OX=10090 GN=Znf219 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002614 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13465 all species →	zf-H2C2_2	Zinc-finger double domain	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050636 all species →	Family	C2H2-type zinc finger domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47772 all species →	ZINC FINGER PROTEIN 200	Interproscan

Gene Ontology

No Gene Ontology signature was detected for KAL9956430.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.