Gene detail

Detailed information of KAL9957762.1 in Oculina patagonica

Genomic Location: chr11:2522978...2525821
NR annotation: XP_020626192.1, DIS3-like exonuclease 2 isoform X2 [Orbicella faveolata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G034700

ATGAGCCAGACAAGACGAACGAATCAGACGACTCCAAGGTCGCATGAAAGATCTGCGGGAAGAAATTCAACTCCTGGTACGTTTTTTATAAAGACTAAAGGCAACAAGCGCAGGCCTCTCTACGAACAATACTGGCCGGTAGATAAAGTGTCTGCTGGGTTGAAGAGAGGAGAGCTTGTGAAGGGAGTGGTGAGGATAAATCCACGAAATTATGAACTAGCCTGGGTGACTGTACCAGGAATGAAGAGAGATCTGCTGATAGAAGGAATGCTGAGACGTAACAGAGCCCTTCATGGAGATGTGGTGGCGCTGGAAATTTTACCCAGAGACGATTGGAAGATTATGAAGGGAGAATTGGACTACAATGGGCTGGCTTTAGGCGAACCAGATCAAGAACGCGCAAACATCGAAAAGGTGATACCGAATCTGGATGCCATGACCGTGAGCGACGGGGAAAATTCACAATCCTCTGAAACACCTGTAAGAATACATCATATGACTATCGATGAACTTCCAGACCAATACATGCAAAAAACTGGCAAGGTTGTGCATATAATTGAGAAGAAGCACTCTCGTGTTGCTACTGGACATCTCAAGCCCTTCCCCCACCCCAAAGAATGCCCTGATGGACTCTTCTCTCCAATTGACAGTCGGTTGCCACGGATACGCATCCCGCGCGAAAACTGCCCGCCTGGATTCTTTGACAGACAACGTGACTTCGAAAACACGCTGCTCGTGGCGCGTATTGTCAGTTGGCCCGAGACCTCTTCGAAAGATTCTTTCCTCGCGATCGGTTCCATCGCGCGAAGCCTGGGCGAGGCGGGTGACATCGAACCAGAGACAGAAGGGATACTCCTGGAGTACGGGATCGATTCAGGGCCGTTTTCTGACGAAGCTCTGGCGTGTTTACCTCAGGAAACACCTTGGAAGATACCCGAAAAGGAGCTAGAGTACAGAAGGGATTTCCGTGAAGACTGCGTTTTTACGATTGATCCTCTTACAGCCAGAGATTTGGACGATGCAGTTCACTGCAAGAAACTTAAAGATGGCCTCTTTGAAGTTGGAGTCCATATTGCCGATGTCAGCTATTTTGTTCGCCAAGGAACAGCGCTGGACGAAGTGGCTGTAGAAAGAGCAACTTCAACGTACATGGTGCAGAAAGTCGTACCCATGCTTCCGCGCCGCTTGTGCGAAGAGCTGTGCAGTTTGAACCCGGGCGAAGATCGTTTGACATTCTCCGTTGTTTGGCAAATGTCAGATAAAGGAGAAATCTTAGATGAGTGGAAAGGAAGAGGAATCATTCGCTCGCGTATCAAGATGGCCTACGAACACGCCCAAGATATGATCGAGAAGCCAAACCGGAAGTGGAATCCAAACGAGCTGCCACCGATCTCAGATGGCGCGAGCGTTGAGGAGATCTCGGCACAAGTGAACCAGCTTCATAAGTTCGCCGTGCGTCTTAGGCGCAATCGTTTTGAAAATGGCGCCCTGCGCCTCGATCAAGTCAAAATCCGGTTTGACCTCGATCAAGAAACAGGTTTGCCCAATGGCTATCACGTGCACAAGCAGCGAGATGCGAACAAGCTGATCGAAGAATTTATGCTGCTAGCCAACATGGCCGTGGCGCATCACATCTATGCTGCTTACCCCGAGATGGCGCTGTTAAGGCGTCACCCAAAACCACATCAGAAACAACTCGACGATCTTATCGAGTTGTGTAAATCATTTGGGATCAGCTTCAACGGGACCTCTTCCAAAACCATTCACGAGTCGCTAGCACAATTTCCGCTGGGCACCCCCGAGCGTGAAGTTTTGGTCAACCTGACCATGCGTCCCATGAAAAACGCGGAGTATTTTTGCACGGGGTCCGTAGAGGAAGGCGAATATGGACACTACGCCCTGAGCGTACCTCTGTACACGCATTTTACGTCCCCAATAAGAAGATACCCGGATGTAGTAGTGCATAGGCTCCTGGCCGCGAGTCTTGGTATAGATCAACCGCTGAATCAAGATCCCGCGATCACTGACATGATAGCGGAACATTGCAATGATCGTAAACTTGCAGCTAAGAGGGCGAGTGAGCTAAGCAACGAGATGTTCTTTGGTATTTTTGTGCGTGAAAGCGGTCCTCTGGAGGAAGACGGCATGGTGTTGAATTTAATGGACCAGTCCTTAGATGTTCTTGTACCCGAGCTGGGTGTGGTCAAGAGGGTGTACTTCAAGTTCTGTCCCGGAGTGAAAAGCTACACGTTCACAAAAGGCCAGAAGGGAAAACCAGCCGAGTTGTGTTTGGTTTGGAGCGTCAAGTTAAAATCAAATAACGCTACTTACGAAGAGGAGCAAGAGGTGAAGATTTTCAATAAGGTCCGGGTGATTTTAACAACAGAAAGCGAGACTGAGGCGAAGACCGCACACCCTTTCAAGGTCATGGCGAAACTAGTCCCCTCTCTCAAGTGCGGAGACGAATATTACATCCCGTCAACTCCAGCAGCTGATAAATCACTCAGGAAGAAAAGGGCTGCCACAAGCTCCGCAGAAGCTGCTCCTCCGAACGCTGCCAACGATGTCCGAAAGAAACTCTTTGATTCAGAAAAAGAGCAGCAAAAGTCACGTGGTTCCGATGTCACTGCCGAGTCTAAAGAAGCAGATGACGTCAATCCCGCGAGTGGCAAAGGCGAAGATGACGAGACCGCATCACTTGGTTCCGATGACGTCATTGTTGAGTCTGATGACGTCATTGTGGAGTCCGAAGAAGACGAAACAAGCACATTGCCGAACGAGGCTACGAACGTAGCCGAAGATGGTTCCGATGATGTTATCATAGAATCGGAGTGCGTCGATTAG

Transcript

rna-ACROYT_G034700.t0

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0V9R3	DIS3-like exonuclease 2 OS=Xenopus tropicalis OX=8364 GN=dis3l2 PE=2 SV=2
Q8CI75	DIS3-like exonuclease 2 OS=Mus musculus OX=10090 GN=Dis3l2 PE=1 SV=1
Q8IYB7	DIS3-like exonuclease 2 OS=Homo sapiens OX=9606 GN=DIS3L2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007567 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17216 all species →	Rrp44_CSD1	Rrp44-like cold shock domain	Domain	Interproscan
PF17849 all species →	OB_Dis3	Dis3-like cold-shock domain 2 (CSD2)	Domain	Interproscan
PF00773 all species →	RNB	RNB domain	Domain	Interproscan
PF17877 all species →	Dis3l2_C_term	DIS3-like exonuclease 2 C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033771 all species →	Domain	Rrp44-like cold shock domain	Interproscan
IPR022966 all species →	Conserved_site	Ribonuclease II/R, conserved site	Interproscan
IPR050180 all species →	Family	RNR Ribonuclease	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR028591 all species →	Family	DIS3-like exonuclease 2	Interproscan
IPR041505 all species →	Domain	Dis3-like cold-shock domain 2	Interproscan
IPR041093 all species →	Domain	DIS3-like exonuclease 2, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23355 all species →	RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0010587 all species →	Biological Process	miRNA catabolic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0034427 all species →	Biological Process	obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAL9957762.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.