Gene detail

Detailed information of KAL9965867.1 in Oculina patagonica

Genomic Location: chr8:33310434...33314344
NR annotation: XP_020614014.1, zinc finger and SCAN domain-containing protein 22-like [Orbicella faveolata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-ACROYT_G029721.t0

TCTCAAAAATGGCGGCTACTTTGGTCTGAAAATCGATCTTTCTTCGCTGGTTTCTGTTGGGATCAAAGCTGAGATGATTGGATTCTTCTAAATATGACGATATCTTGCTTAAATATTACACATTAAGAGCTAAGAAATGCCAGAAATGGAGGTGAACATTAATTCTACTATAACCTTACCTTCTGACACCATCAACTTCATCTTTGAATTCACTCAGCCTGGGTCAGAAGAAGCCAGTGAAAATGGAAATGGGGTAACGTCAGAAAGGACTGGTAACCAATTTGGTGATGTGGCTCATTGCCAAGTAGGGTCACATGATGACCCAGATGTGTCAGCTGAGATATCATTTACAAATGATGTCAACCGCTCAAGTGGAAATGATGCAACACAGGAAACTTTGCGAAGTGATGTCATTGAACAAATAAATACTCATGTGACAAAAAGAAAGTCTTCAGAGAAATCAATGACAAATTCATCACAACTGTCAATTTCAAAACCACAGCGACCATTTATTTCAAATCAACGACAGCGAATGATTTCACAACGACGACAGCAATCGATTTCAAATCCACAACAGCCATCAATTTCAAGTgctcaacaaaaacaacaaaggccATCAGATATGTTTAATATGCTCATCCAAAATGGACAAGTTGTTCCAAGAGTGTACGTCCAAACACCAGTTCAAACAGAACCTTTACAGAAAGGGGAAGCTTCAACCACAAGACCGCAAGGagtaaaaaaattagcaaatgaTAAAATTGTGGAAAGCATGGCAAATAATAACACAGTGGAAGACATAGCAAGTAGTGAGAAGGTTGAAGGCACTCAGATAACTAATTCTACTAAGCTGGCTCTTCGgaactttttgaaaaagaaatctGCAGCAAATGTTGGTGAAACAAATGATAAAAGTGTTGTAGTTAATTCTGATCCTGAGGTCCAAATCCTTTCAACTGTCGGAGAATTTGAAGTGAGGAATGCTTGTGACAAAGATAGAGCTTGTTCAGATCAGTTGAGCAATACTCAGGAGGATGCGATAAATGTAACAACAGGAACTGAGAGTCAAAAAGTCCCAGAAGAAGTCCTCATTGTGGAATCTAGTTCACCGGACACAGTACAAACCAGTTCAAACTCTGCTCAAAAAGGCAATGATGATCAGCTATCAAATCAACAATCAGCCATCACAGAGTCAAATGCTGAAAGTactgttcaagaaataaagcaaGGTGACAATAACATTACAAGTACCTCTGATAGTGCGTTGTCCAATGAGTCAACAACTACTACTCAAGAAGTGGATGTTGTTGTGCTCCCATCACTTTTGCAACCAAATGTTCCAAAAAAGACTGCAAAAAGGAGGGCTGAGAGAGTGCCGAAAGAACCAACAGGcatcaagaaaaagaagaaaaagaacccTCGCGAGTGTGTAGAATGCGGGAAAGTTTTGTCTTCCACGACACAATATTGTCAGCACATGAACATTCATTACGACCGAAGACCTCACAAGTGCAACGAATGTGGAAAAGCATTTCGTCAACGACAACACCTAGCCAAGCATAAATTAATTCACACCGGGGAAAAACCTTACGTGTGTCAGCACTGTGACAAAGCATTCAGGTCGGTTTACGCACGGCGAGACCATGAGCGGAtccacacaggagagaagccttgcAAATGCCCGCACTGTGACAAAATGTTTCGCAGCACAAACGCGCTGAAAGAACATGAAAAGGGCTTCCATAATATTCAAGAAAAGAAGATCTATACGTGTAAAGTTTGCGGTAAAACATTTTCTTGGTCTAGTGCACTTGCGGCACACAAAAAACGCCACGCAGACGTTTGGGCGTACAAATGCAATAAGTGTTCCAAGGCTTTCAAGAATTACAGCGCTTTGTGGAATCACAAGAAAACCCACTCGAAAGAGAAACCATTTGAGTGCGACATCTGTGGACAGCGCTTGAAAAAACGTGGAAATCTTAAAAGGCACATTTTGACGCAACATGAGCCTGAGGAGGCGGAAGAATGCCTTAAAACCAGCAAACAGTTTGAAAATTTCcgtgcaaagaaaaacaaaaaactgaatgATTTATGATTAATTTTGATCATGTGGGGTATGTTACAGTAAGATTTCGAGAAGTCAAAAATTAAGGTTGACCAACGATGGCAAGGATAGAAATGGATTACaggatgaaagaaaaaatagatAGCAGAAGGCCCAACGTTTTCACGTTTgaaattttatataaaaaaatgcgAATATGAAATAACAGTTACGCCCAGAAATTATAAAGAAGCTATAAAGTTCTTgcttaaattacatgtaaaagtcACAATAGTAATTGCAGTTTTGTTAAGGTTAAAGTGATTCGTAACTCTCTTAGATTTTCTTGGATATCGCTTAGAAAAGGAAAACGCAAGATGTTTTTGTAAACTGTTTTTCGTTATTTAAAAACGCAAGATGTTTTTGTAAACTGTTTTTCGTTATTTACCAGCTTTCAGCCCCAAATACATTTTACATACATGTTGTACTTACCTCGAGGACGATGTTTGTTAATTAAGATATAAATTTATACGTTTCTCTATCTTGCTGTTAACTAGGTCATTTCCCGTGTTGGTTTTGGAGTCAGGGTCCTTCCACAGCAAATTAAACAACACTTCAC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011487 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13912 all species →	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan
PF12171 all species →	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR022755 all species →	Domain	Zinc finger, double-stranded RNA binding	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24381 all species →	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0001227 all species →	Molecular Function	DNA-binding transcription repressor activity, RNA polymerase II-specific	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.