Gene detail

Detailed information of KAL9966209.1 in Oculina patagonica

Genomic Location: chr7:3231456...3255801
NR annotation: CAH3130880.1, unnamed protein product [Pocillopora meandrina]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G024248

ATGGATGACGACGTCGAAGTAGAAGATTTTGAGATCACAGACTATGATCTTATGCAAGGGTTCGGTTTGGGCTTCAGCAGACGAAAAATGACCAAAGAAGAAGCAATTTATGGCATGTGGGCGGATAAAGATTCAGATGATGATGAAAGATCAAGTGGATATTCGGGGAAAAGAAAAAAAGACTATTCCAAACCACTGAATTTTGTCAGTGGGGGCATTGTGCAGAAAGGAAAGGACAAGAATGCTGAAGATGATGATACTGCCAGTGTTGGAAGCAGTGCTAGTGAGAAAGGTCCTGGATCAGGGAGAAACTCTCCTGTGGTCAGAGATAAGAAGTTGTTTAAAAGCACGGGAGTCAAGAAAGAGGTTGGCTCACTTGGGTCACAAATGTTTGCCAACAAGCTTCGGAAGACTGGAAAGGAATTTGGAGCTTTTGAAAAACACACAAAAGGATTTGGAATGAAAATGCTTCAACAGATGGGTTATGAACCAGGCAAAGGTCTGGGTAAGGAAGGACAGGGCATTGTGTTTCCAGTGGAAGCTTACAAGCGTGAAGGCCGTGGAGCATTGGGTAGTTATGGTCCAGAGAGAACCAAGAAAGCTCAAGAGTTACGACCTAATTATGATGAAGAAGAAGAGGAGGAAGAAAAATTCAAAGAACAACTTCAACAGTGGAAGAAAACAGATGAGGGGTATTCAAAACCAAAGTATGTCTACAAAACTGCAGATGAAGTCAAGGCTTCTGGAGGAACCAAAAAGGGACCATCAATATCTCTGAAGCACAGCAAAATAAAGGTTGTTGACATGACTGGACCAGAAACCAAGATCCTAACAGGTTATGGCTCCATTGCCCAGCAACATGCCAAGCCAGGAGAAGTCCCTCCAACCACACTAGTTCGAGATGCTGAGGCATCCTTTTCCATGCCAGAATTGACATACAACTTAAATCTCCTGATCGATATGGCAGAGACAGACATCATTCAAACAGACAGACAATTGAAATTTGAGCGAGATCTTGTGGTCAACCTTAAACATGAAGAAGAGAAGCTCACTTCAGTGTTAGAACGAGAGGAAAAAGACATCAAAAGATTGATGGAAGTTATCAATATGATTGATAGTTGTCGACAGCAGTCACTGTCCCCAGATGATGATGCCCTCACTCTTGATAAGTGTGAACAAATTTTTAACACTTTACAAGAAGACTACTATGAGGAATTCAAGATGTATGACTTGGCATCCCTAGCAGAACCTCTTGTTTTCTCTTTGCTGAGGAATCATTTTCAAGGCTGGAATCCTCTTCTTAATCCTTCTCATGGATTGGAGGTGATGGTTAGATGGCAGGAGATACTTCAGAGGAAAGAAGCTGAAAACTCTGCATTCACCCTGACACTAAATCAAGGACTGGCACATGGAGAGGAAAATACATGGAACTGTCGCAACTATGATGGCATGACAAACTTGATTAACACCTGGGCACCAGTCTTCCCTCCGTGGATCACAGAAAACATCAAACAGCAGCTAGTTCTACCTCGTCTGCAGGCTGAAGTAGATGCATGGAATCCATTAACAGACTGTGTTCCTGTCCATGCATGGATCCATCCTTGGCTTCCTCTCATGGGTGACCAACTTGAGCCCCTGTATGCACCAATCAGGTTTAAGTTAGCGTCGGCCCTCACCAACTGGCATCCGTCGGACCCTTCTGCAAAGATGATCCTAGAACCCTGGACCAAGGTTTTTTCCAAAGGTACAATGGATGCCTTCATTCTTCGTTCCATTTACCCCAAGTTGTCGCAGTGCCTAGCTGAGTTCATCATAAACCCACATCAGCAACATTTAGAACCTTTCCACTGGGTCATGGAGTGGAAGGACATTATAACACAACAGCATTTCATCAGTTTGCTGGAGAAACATTTCTTTCCACGTTGGATTCAGGTTCTTCGTGGCTGGCTAAGTGTGAGTCCCAATTACGATGAAGTCATTCAATGGTATTCAGGCTGGAAGGGCATGTTTAGCGAGGATCTGCTCAACAATCCAAGTGTCAAAGTCCAGTTCAACCGGGCACTTGACGTCATGAACCAGGCTGTGACGTCACCAGGTGGCCTGCTACAGCCGGGAGCTAAAGAGAACATAGCTTATCTGACCAGCACTGAAAGAAGAAGAGAAGCCGAGGCAGCAGCCATGGCGGCGGCAGTTGAAAAACAAAAGGCAGAAGCAGCTCGACAAGTGGCGGCCTCTCAAAACGTTCCTTCCAACTTCAAAGACCTCATACAAAACTTGGCTGAAGAGAACAATCTTTTATTCATGCCTATTCCTAACCGACGTTTCGACGGCAAAGCTTTGTACTCGCTGGGTAAAGTGACGCTGTATATCGACAGAGGAGTTGTGTTCGCTCACACACAAGGCGTGTGGAAACCCGTATCGTTACAAGACCTAATGGCTATGGCAAAGTGA

Transcript

rna-ACROYT_G024248.t0

TTCAAAAATGGATGACGACGTCGAAGTAGAAGATTTTGAGATCACAGACTATGATCTTATGCAAGGGTTCGGTTTGGGCTTCAGCAGACGAAAAATGACCAAAGAAGAAGCAATTTATGGCATGTGGGCGGATAAAGATTCAGATGATGATGAAAGATCAAGTGGATATtcggggaaaagaaaaaaagactatTCCAAACCACTGAATTTTGTCAGTGGGGGCATTGTGCAGAAAGGAAAGGACAAGAATGCTGAAGATGATGATACTGCCAGTGTTGGAAGCAGTGCTAGTGAGAAAGGTCCTGGATCAGGGAGAAACTCTCCTGTGGTCAGAGATAAGAAGTTGTTTAAAAGCACGGGAGTCAAGAAAGAGGTTGGCTCACTTGGGTCACAAATGTTTGCCAACAAGCTTCGGAAGACTGGAAAgGAATTTGGAGCTTTTGAAAAACACACAAAAGGATTTGGAATGAAAATGCTTCAAcagATGGGTTATGAACCAGGCAAAGGTCTGGGTAAGGAAGGACAGGGCATTGTGTTTCCAGTGGAAGCTTACAAGCGTGAAGGCCGTGGAGCATTGGGTAGTTATGGTCCAGAGAGAACCAAGAAAGCTCAAGAGTTACGACCTAATTAtgatgaagaagaagaggaggaagaaaaaTTCAAAGAACAACTTCAACAGTGGAAGAAAACAGATGAGGGGTATTCAAAACCAAAGTATGTCTACAAAACTGCAGATGAAGTCAAGGCTTCTGGAGGAACCAAAAAGGGACCATCAATATCTCTGAAGCACAGCAAAATAAAGGTTGTTGACATGACTGGACCAGAAACCAAGATCCTAACAGGTTATGGCTCCATTGCCCAGCAACATGCCAAGCCAGGAGAAGTCCCTCCAACCACACTAGTTCGAGATGCTGAGGCATCCTTTTCCATGCCAGAATTGACATACAACTTAAATCTCCTGATCGATATGGCAGAGACAGACATCATTCAAACAGACAGACAATTGAAATTTGAGCGAGATCTTGTGGTCAACCTTAAACATGAAGAAGAGAAGCTCACTTCAGTGTTAGAACGAGAGGAAAAAGACATCAAAAGATTGATGGAAGTTATCAATATGATTGATAGTTGTCGACAGCAGTCACTGTCCCCAGATGATGATGCCCTCACTCTTGATAAGTGTGaacaaatttttaacacttTACAAGAAGACTACTATGAGGAATTCAAGATGTATGACTTGGCATCCCTAGCAGAACCTCTTGTTTTCTCTTTGCTGAGGAATCATTTTCAAGGCTGGAATCCTCTTCTTAATCCTTCTCATGGATTGGAGGTGATGGTTAGATGGCAGGAGATACTTCAGAGGAAAGAAGCTGAAAACTCTGCATTCACCCTGACACTAAATCAAGGACTGGCACATGGAGAGGAAAAtacATGGAACTGTCGCAACTATGATGGCATGACAAACTTGATTAACACCTGGGCACCAGTCTTCCCTCCGTGGATCACAGAAAACATCAAACAGCAGCTAGTTCTACCTCGTCTGCAGGCTGAAGTAGATGCATGGAATCCATTAACAGACTGTGTTCCTGTCCATGCATGGATCCATCCTTGGCTTCCTCTCATGGGTGACCAACTTGAGCCCCTGTATGCACCAATCAGGTTTAAGTTAGCGTCGGCCCTCACCAACTGGCATCCGTCGGACCCTTCTGCAAAGATGATCCTAGAACCCTGGACCAAGgtTTTTTCCAAAGGTACAATGGATGCCTTCATTCTTCGTTCCATTTACCCCAAGTTGTCGCAGTGCCTAGCTGAGTTCATCATAAACCCACATCAGCAACATTTAGAACCTTTCCACTGGGTCATGGAGTGGAAGGACATTATAACACAACAGCATTTCATCAGTTTGCTGGAGAAACATTTCTTTCCACGTTGGATTCAGGTTCTTCGTGGCTGGCTAAGTGTGAGTCCCAATTACGATGAAGTCATTCAATGGTATTCAGGCTGGAAGGGCATGTTTAGCGAGGATCTGCTCAACAATCCAAGTGTCAAAGTCCAGTTCAACCGGGCACTTGACGTCATGAACCAGGCTGTGACGTCACCAGGTGGCCTGCTACAGCCGGGAGCTAAAGAGAACATAGCTTATCTGACCAGCACTGAAAGAAGAAGAGAAGCCGAGGCAGCAGCCATGGCGGCGGCAGTTGAAAAACAAAAGGCAGAAGCAGCTCGACAAGTGGCGGCCTCTCAAAACGTTCCTTCCAACTTCAAAGACCTCATACAAAACTTGGCTGAAGAGAACAATCTTTTATTCATGCCTATTCCTAACCGACGTTTCGACGGCAAAGCTTTGTACTCGCTGGGTAAAGTGACGCTGTATATCGACAGAGGAGTTGTGTTCGCTCACACACAAGGCGTGTGGAAACCCGTATCGTTACAAGACCTAATGGCTATGGCAAAGTGACAAAGTTTCCCGTGTGAAGCACAGAAAATGGACGACTTCTCAGTCTTCTGAAAGAAACTTCTCTCCCTCGCAGTGTGCCAGATGCCAGCTCTTAAATTACAGCGGAAGGAAAGAATTTGCAAAGTACTTATTTTCGTAATATCATGCATCAATCTAGGATTTCCACTGATTACAAGCTtttgagagctgctacactgcCGCAAGTTTCCCGCCGTTTCTAACATTTGGGCAATTTGTTAGCCGGTGTGGAGTGCGCCCGCGCGGAATGTTTCCCGCCATTTGTGTAAACGGTACAGAAAAGAAACCAGAGGAGAAAAATAGATATTGGATCGGAGATGCTGTCGTATAAACGAAACGTGTCAGGGACGTCTCCGTATTAGCAAACTGAAGGATATTTTATTGCCATTATGATACTGTAACAAACGTCTTACTTACCCACTAAATCACGCTATTGCTTCTATTCGACGCCATTGCTACCAAAAGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66J74	Tuftelin-interacting protein 11 OS=Xenopus laevis OX=8355 GN=tfip11 PE=2 SV=1
Q5ZII9	Tuftelin-interacting protein 11 OS=Gallus gallus OX=9031 GN=TFIP11 PE=2 SV=1
Q9ERA6	Tuftelin-interacting protein 11 OS=Mus musculus OX=10090 GN=Tfip11 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004065 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan
PF07842 all species →	GCFC	GC-rich sequence DNA-binding factor-like protein	Family	Interproscan
PF12457 all species →	TIP_N	Tuftelin interacting protein N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045211 all species →	Family	TFP11/STIP/Ntr1	Interproscan
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR022783 all species →	Domain	GCF, C-terminal	Interproscan
IPR022159 all species →	Domain	Tuftelin interacting protein, N-terminal domain	Interproscan
IPR024933 all species →	Family	Septin and tuftelin interacting protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23329 all species →	TUFTELIN-INTERACTING PROTEIN 11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000390 all species →	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0071008 all species →	Cellular Component	U2-type post-mRNA release spliceosomal complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13103	TFIP11; tuftelin-interacting protein 11	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.