Gene detail

Detailed information of KAL9967222.1 in Oculina patagonica

Genomic Location: chr7:16617892...16650150
NR annotation: XP_020616882.1, DNA (cytosine-5)-methyltransferase 3A-like [Orbicella faveolata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G025401

ATGGCGTCAACTTCCTCTATTGCGGACACTGTAAAAGGGAATACTTCAACAAAAAAGGCAAGAGTCAAGAGAAGACTTGAGTTTTCTGCTTCAGATTACAAATCCAAGAAAAAGATCAGAGTTAAGAGTGATGTCGTTATTTCTATCAGCCCTCTAGAACCTTCTGCTGTTAAAAAGCACAGCAAGTCACCCCCAAGTGACCAAAAGATACCTGATGAGGAGCCTGAGGTGCCTGAGTATGTTATTGGCCAGTTGATATGGGGCCGGCTGAAGGGATATGACTGGTGGCCTGGACGTGTTGTTTCATATAATGAAGTACAAAAAGCTCCTCCGTCGCCAGATAACCACTGGGTCAGGTGGTTTGGAGATAACAAGCTTTCAATGCTTCCTGTTCAATGTATACGGCCACTGTCTAAATTCAGAGAAAGTTTCAACCTTCCAAAGATGAGAGGACTTTATAAGAGAGCTATTATTAATAGCTTGGAGGTGGCAGCTAGAAGGTGTGGAAAAGCGTTCACTAAAACCAACAATCAGCAAACAAGAAAAAGCAAGCAAGGTAGCAGAACAAGACAAGCAAAGGTTGAAGAAAAGGAAACGTCAGAGCAAAATGATGAACCTCTTAGTGACAAGGAGAGAGATGAGATGATGGTGAAGTGGGCAGTAAATGGATTTAAACCAACTGGTCCAAAAGGTTTTGCACCAACTGAAGCAGACATGATGCACAGCCCACCAACAGCCATTGTTACTGAAGTGGATTTGACATCAGAGAGCACACCAGTGACTTTAGATCACAAGACAAGATTTGGCAAACCAATCAGTGAACCAAATCTGGCAGAAGATATCAAAGCACTGTTTGATGCAGTTAAAGCTGGTGAAAGGAAAATTGAAGGAATCTGTCTGGCATGTGGTGACAACAAAGTTTGTTCTAAACACCCTTTGTTTGAGGGAGGACTGTGTAAGGAATGTAAGACATGCTTCCTGGAAAATGTATATCTGTATGACGAGGATGGTTCTCAGATGTATTGTACTATCTGTGGTGATGGAAAAGAAGTGTTCATGTGTGACAAAACTGGTTGCTTCAGGTCATACTGCAGTCTATGTATAGGCATGTTATGTGGAAAAAAGGCTGTGACAGAAATTGCAGCATCTGAGCAGTGGGTGTGTTACATGTGTTCAGGAAAGTCACAAGGACTTATCACACCCCGAAAGGACTGGTCAGCCAAGCTGCAAGAATTGTTCATGAATGACAAGGAACAGGATTTTAAACCGCCGTACATTTTTCCTTCTGTTCCTCCAGAACAGCGCAGACCAATCCGGGTGCTGTCATTGTTTGACGGGATAGCTTCTGGATTTCAAGCCTTGAAAGAACTTGATATTGAAATAGAGGTGTACTGTGCTTCTGAAATTGATGAACAGGCCATGCAGGTGGCCAAGGTAAATCATGGTACTAAGATACATCACATTGGCGACATCAAAGAAATCTCTAGAGATAAGTTGGAAGAACTAGGACCATTTGATTTTGTTTTTGGAGGAAGTCCGTGTAATGACCTCTCCATTGCAAATCCATTGAGACGTGGAATTTGTGAGGGAACTGGTCGACTTTTCTTTGACTTTTTTCGGCTCCTCCAGTTTGCAAAACCCAAGTCAGAACTGGACCGACCTTTCTTTTGGCTTTTTGAAAATGTTGTTGGCATGAGAGCTGAAGACAAGAGCACTATTTCAAGATTTCTGGAGTGTAATCCAGTGGTTGTAGATGCAAAAGAGATATCTCCTGCTCACAGAGCACGGTATTTCTGGGGAAACCTGCCTGGAATGAACAGACCAACAATACCTTTACCAGGCGACAAACTGTGCTTACAAGATTGTCTTGAACCAAATTGTGGACGGCAGGCCAAGTTCACCAAAGTACAGACTCTCACCACCAATGCCAACTCTATGCTTCAAACAAAGAAGGGTTTGTTTCCAGTTCAATTTACAGCAAGTGATGGGCAACAAAAGGACGACATTCTTTGGATAACAGAAATGGAAAGGTTGTTTGGTTTACCTTCTCATTACACTGACGTCAGCAACATGGGCCGGTCTCAAAGACAGCGGCTGCTAGGGAAGTCTTGGAGTGTTCCTGTTATAAGGCACCTTCTGTCCCCCCTTAAGGATTACTATAAATGTGAAGCATAA

Transcript

rna-ACROYT_G025401.t1

CACTACGAGTGTATTGTGGTAAAatgatgaacaaaaaaaatcatcaaaccACAAAATGTATTGCTGTTTCTTGCCACTTTTCGTTGGGGAATGCTATTTAATTTATTCTCGTGTGGACGGTCCCGGTTTTTCCGTGTAACCAACGGAACCCTTGTACCCAGGGCTATGTGCCGGCCCAGTCTGTGCAGCGAACCATCACAAAGCTGCCTTCAAACTACAAATGTGCCGGCATACCTGAGCCTTTATCTGATCAGATTCCTCGCACAACATGGCGTCAACTTCCTCTATTGCGGACACTGTAAAAGGGAATACTTCAACAAAAAAGGCAAGAGTCAAGAGAAGACTTGAGTTTTCTGCTTCAGATTACAAATCCAAGAAAAAGATCAGAGTTAAGAGTGATGTCGTTATTTCTATCAGCCCTCTAGAACCTTCTGCTGTTAAAAAGCACAGCAAGTCACCCCCAAGTGACCAAAAGATACCTGATGAGGAGccTGAGGTGCCTGAGTATGTTATTGGCCAGTTGATATGGGGCCGGCTGAAGGGATATGACTGGTGGCCTGGACGTGTTGTTTCATATAATGAAGTACAAAAAGCTCCTCCGTCGCCAGATAACCACTGGGTCAGGTGGTTTGGAGATAACAAGCTTTCAATGCTTCCTGTTCAATGTATACGGCCACTGTCTAAATTCAGAGAAAGTTTCAACCTTCCAAAGATGAGAGGACTTTATAAGAGAGCTATTATTAATAGCTTGGAGGTGGCAGCTAGAAGGTGTGGAAAAGCGTTCACTAAAACCAACAATCAGCAAACAAGAAAAAGCAAGCAAGGTAGCAGAACAAGACAAGCAAAGGTTGAAGAAAAGGAAACGTCAGAGCAAAATGATGAACCTCTTAGTGACAAGGAGAGAGATGAGATGATGGTGAAGTGGGCAGTAAATGGATTTAAACCAACTGGTCCAAAAGGTTTTGCACCAACTGAAGCAGACATGATGCACAGCCCACCAACAGCCATTGTTACTGAAGTGGATTTGACATCAGAGAGCACACCAGTGACTTTAGATCACAAGACAAGATTTGGCAAACCAATCAGTGAACCAAATCTGGCAGAAGATATCAAAGcACTGTTTGATGCAGTTAAAGCTGGTGAAAGGAAAATTGAAGGAATCTGTCTGGCATGTGGTGACAACAAAGTTTGTTCTAAACACCCTTTGTTTGAGGGAGGACTGTGTAAGGAATGTAAGACATGCTTCCTGGAAAATGTATATCTGTATGACGAGGATGGTTCTCAGATGTATTGTACTATCTGTGGTGATGGAAAAGAAGTGTTCATGTGTGACAAAACTGGTTGCTTCAGGTCATACTGCAGTCTATGTATAGGCATGTTATGTGGAAAAAAGGCTGTGACAGAAATTGCAGCATCTGAGCAGTGGGTGTGTTACATGTGTTCAGGAAAGTCACAAGGACTTATCACACCCCGAAAGGACTGGTCAGCCAAGCTGCAAGAATTGTTCATGAATGACAAGGAACAGGATTTTaaACCGCCGTACATTTTTCCTTCTGTTCCTCCAGAACAGCGCAGACCAATCCGGGTGCTGTCATTGTTTGACGGGATAGCTTCTGGATTTCAAGCCTTGAAAGAACTTGATATTGAAATAGAGGTGTACTGTGCTTCTGAAATTGATGAACAGGCCATGCAGGTGGCCAAGGTAAATCATGGTACTAAGATACATCACATTGGCGACATCAAAGAAATCTCTAGAGATAAGttgGAAGAACTAGGAccatttgattttgtttttggaGGAAGTCCGTGTAATGACCTCTCCATTGCAAATCCATTGAGACGTGGAATTTGTGAGGGAACTGGTCGACTTTTCTTTGACTTTTTTCGGCTCCTCCAGTTTGCAAAACCCAAGTCAGAACTGGACCGACCtttcttttggctttttgaaaatgttgttgGCATGAGAGCTGAAGACAAGAGCACTATTTCAAGATTTCTGGAGTGTAATCCAGTGGTTGTAGATGCAAAAGAGATATCTCCTGCTCACAGAGCACGGTATTTCTGGGGAAACCTGCCTGGAATGAACAGACCAACAATACCTTTACCAGGCGACAAACTGTGCTTACAAGATTGTCTTGAACCAAATTGTGGACGGCAGGCCAAGttcacCAAAGTACAGACTCTCACCACCAATGCCAACTCTATGCTTCAAACAAAGAAGGGTTTGTTTCCAGTTCAATTTACAGCAAGTGATGGGCAACAAAAGGACGACATTCTTTGGATAACAGAAATGGAAAGGTTGTTTGGTTTACCTTCTCATTACACTGACGTCAGCAACATGGGCCGGTCTCAAAGACAGCGGCTGCTAGGGAAGTCTTGGAGTGTTCCTGTTATAAGGCACCTTCTGTCCCCCCTTAAGGATTACTATAAATGTGAAGCATAAAGTGATTTTACAACATTGATCAACATTGATCAGTATATTCATCGGGTATTATTAGTTGCGTCAAGCGGTAAAAACGTTGTTCCTTATTAGGAGAGTAGTGTTAGTCATGCTTATAAGATAtagCAGTACAGTTGTATATCAGTTATTCCACATTGCcttattttgaatattttagtacttttttaaaatatataaacaatttCTAATTCAGGGTTGCGTTTTGGCTTTGTTCTTGTAATAAACATTTgagggaacaaaaaaaattgtgggTGCCTTCTTTACTAACCTGAATATCAGATGCTTCAGTCAGGGGAGTTTGTGTATACATTTGCGAATTTCAGTTTGAGACGTCTAACATTGTCTTGAAGACAATGCTGAAAATTTTTCCATTCTGAGCTTAAGAAAGGCATGCGATGCAAATGCAAGAGTACCGGGTAGTTCCAAATTTATGTAGTTGGCAGGTAAAAAAGTTCGCTTACTTTCCACATGACTGTTAAGTTTCATTTGGATTGGTTTGTTGAATTGCATGCCCTCTAGTGCCAGTTTGTTTCGTGGGTATGTTGTTACTAACAAGTAAGCTTTGGTTTGAACTTTCTTGTTCTGGTCTGAAGACGGATGAAATAAAAGTCTTTGTAACTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88508	DNA (cytosine-5)-methyltransferase 3A OS=Mus musculus OX=10090 GN=Dnmt3a PE=1 SV=2
Q1LZ53	DNA (cytosine-5)-methyltransferase 3A OS=Rattus norvegicus OX=10116 GN=Dnmt3a PE=1 SV=1
Q9Y6K1	DNA (cytosine-5)-methyltransferase 3A OS=Homo sapiens OX=9606 GN=DNMT3A PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004545 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21255 all species →	ADDz_Dnmt3b	DNMT3, ADD PHD zinc finger	Domain	Interproscan
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan
PF00145 all species →	DNA_methylase	C-5 cytosine-specific DNA methylase	Domain	Interproscan
PF17980 all species →	ADD_DNMT3	Cysteine rich ADD domain in DNMT3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001525 all species →	Family	C-5 cytosine methyltransferase	Interproscan
IPR025766 all species →	Domain	ADD domain	Interproscan
IPR049554 all species →	Domain	DNMT3, ADD domain, PHD zinc finger	Interproscan
IPR018117 all species →	Active_site	DNA methylase, C-5 cytosine-specific, active site	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR040552 all species →	Domain	DNMT3, cysteine rich ADD domain, GATA1-like zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23068 all species →	DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAL9967222.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.