Detailed information of KAL9967310.1 in Oculina patagonica

Genomic Location: chr7:18009107...18018310
NR annotation: XP_020621182.1, 26S proteasome complex subunit SEM1-like [Orbicella faveolata]
Species Oculina patagonica · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3ZBR626S proteasome complex subunit SEM1 OS=Bos taurus OX=9913 GN=SEM1 PE=3 SV=1
P6089626S proteasome complex subunit SEM1 OS=Homo sapiens OX=9606 GN=SEM1 PE=1 SV=1
P6089726S proteasome complex subunit SEM1 OS=Mus musculus OX=10090 GN=Sem1 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010383 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05160
all species →		DSS1_SEM1DSS1/SEM1 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007834
all species →		FamilyDSS1/SEM1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16771
all species →		26 PROTEASOME COMPLEX SUBUNIT DSS1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006406
all species →		Biological ProcessmRNA export from nucleusInterproscan
GO:0008541
all species →		Cellular Componentproteasome regulatory particle, lid subcomplexInterproscan
GO:0043248
all species →		Biological Processproteasome assemblyInterproscan
GO:0000502
all species →		Cellular Componentproteasome complexInterproscan
GO:0000724
all species →		Biological Processdouble-strand break repair via homologous recombinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10881SHFM1, DSS1, RPN15; 26 proteasome complex subunit DSS1-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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