Gene detail

Detailed information of KAL9967667.1 in Oculina patagonica

Genomic Location: chr7:22925527...22932252
NR annotation: XP_020620928.1, uncharacterized protein LOC110058617 [Orbicella faveolata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G025948

ATGGCAGATCTCCAGCTGGCGTGCTTTCAGAGCAACATGGTAAAACAAGGCACGCCCACAGACGATGAATTAGAAGAGCTGGGCCAAAAAATTGGGGAAGATTGGAAAAAACTTGGGCGTCGCCTTGATGTCAAAGATGAAAAGCTTCAAGAAATAGATCTTGCCCATAACCAATTGTCTGAAAAGGGATATAACATGTTAAAGCATTGGAGAAACAAGAATGGCTCTGATGCAAAGTACCAGGTTTTGCATGATGCATTGAAACATCCACTTGTTGAGCGCTGTGACTTGGCTGAGCAGTTTTGTTACAGTCATCCTGATAATGGTAATTTGTCTTTTAAGATTCGCTGTGATAGTGCTACTAGTAAAAACTCACAAGAGCAAGATTCTCAAGAAAAGAGAGAAAGGGTGAACAGGCACATGAAACAGAAGGTTGATGAGGCAAACGGAAAATTTGATCTCAGCTCATATCAAGGATTACTGGCTTTTCATACGTACTTAGTAAAGGAGCGTGACCTAATGTATATAACCTTTAAGACGGGTTGCATAGAAATATCTGTCAAATGTTGTACCCTGGAGATTCTTGAGCTGTTGTGGGATGATTATCGTTCTGGTCACCTAAATGCAGTAGCCGAGCAGTATCTCATTACAAAGGAGCTTAAAGAAGAGCTTGATATGGAGACCATAACCTTAACAACAACTATCTTGGAGATGGACTACTTGGCATGCAAAATGTCTTTAATGCCTAAAATTTCAGAGTTCGAGTTACCGGGGTTCTACTGTATACCATTTGAGCCAATTGGGAGTTGTTCATTGAGAAAACATGCAGACTCCATGGTCGAAATGCCTAAATTTAATCGTTACAGTTATGCTGTTGTTAACCATTCCAAGGGAAAGCTTCTGGCTCCTCAAGCTGAAGCTCTTCAATGCCTTCAGGTGTTCTTTGAACGATATCCAGCAGGACGTATTGGTCTGATTTCTATGCCAATAGGTTCAGGAAAAAATGGAGTAATCAGTTGCCTTCCCTACTTCTTAGGAAAATTAGGATTGAAACAGCCTCATGAGGAAGGTGCCCCTCCATACGGAGAGCCCCTTCACACGTTTGACAAACCAGTACTGGTTATCGCACCAGATCTGAGAATTTTAAAGCAACTTGAAGGTGTACTGACAGTTTCTTCAGATGCACCAGGTGAGAACTTTCTCTTAAAGAGAGGAATAGTACCATCGATTGCCCAGCGGGATGTCCTTCCAAACAGCCTGAAGATTGAGGAAACCAGCCTAGTCCATCAACCCGAATACCTTGAAAGCAACGAAGTCATTATTACGAATGCGCAAAAGTTTCTGAAGGCCGACTGGGAATATGCCCTCCCTGATGACATCTTCAAGCTTGTCATTGTCGATGGGGCTTATCACCATCCGGCTAGTACATGGCATAGAATCATTCAAAAATTTAAAAATCATGCAATGGTTGTATTTTTTACTGCAAGTCCTTTCATAGGTGATGGGCAGCGCGAACTAGAAGACGACGAAGGGGAAATGGTTTATAGGTTGTCCCTAGAAGATGCAAGAGGAGCACGAGTAATTCGAAGGATAACCTGGGTTCCACTTCACAGTGAGGACACAGATCTCAACAGTATATTTACACTCATCCTTGAGCGTGTCAAGTCCATTCAGCAAAAAAAGGATCAGCAACATCCCCTGCCTGACAATATTCCTCACATGGCTATTGCCATAACCAAGAACATCGCCTTTGCAGAGCAAGTGAGAGACCTGTGGAACAAGAACTGTGGCAGCCCTAATTCTGCAATCGCTTACCATTCAGATGTGCCCAAGAAAGCAAAGCTGGCCATGATGCAAGTAATAAAAACCAACCAAGTACAGCTAGTGGTGGTGGTTGATATGCTGCGGGAAGGATTTGATCACCCACCCATCAGTATAGCAGCCATTATGACCAAGATCGTCTCCCCTGTTAAGTTTGCACAGTTTATTGGAAGGGCTCAGAGAATTGTACGTGTTCAGGAAGGTCCTGAGTCAGACAAAATTTGTGCAGATGTTGTAACCCACAGCTACTTCCAACAGGAGAAAAACTACTTGGCATTTGAAAATGAGGCACTCATTCCAGATGTCTGA

Transcript

rna-ACROYT_G025948.t0

ATGGCAGATCTCCAGCTGGCGTGCTTTCAGAGCAACATGGTAAAACAAGGCACGCCCACAGACGATGAATTAGAAGAGCTGGGCCAAAAAATTGGGGAAGATTGGAAAAAACTTGGGCGTCGCCTTGATGTCAAAGATGAAAAGCTTCAAGAAATAGATCTTGCCCATAACCAATTGTCTGAAAAGGGATATAACATGTTAAAGCATTGGAGAAACAAGAATGGCTCTGATGCAAAGTACCAGGTTTTGCATGATGCATTGAAACATCCACTTGTTGAGCGCTGTGACTTGGCTGAGCAGTTTTGTTACAGTCATCCTGATAATGgTAATTTGTCTTTTAAGATTCGCTGTGATAGTGCTACTAGTAAAAACTCACAAGAGCAAGATTCTCAAGAAAAGAGAGAAAGGGTGAACAGGCACATGAAACAGAAGGTTGATGAGGCAAACGGAAAATTTGATCTCAGCTCATATCAAGGATTACTGGCTTTTCATACGTACTTAGTAAAGGAGCGTGACCTAATGTATATAACCTTTAAGACGGGTTGCATAGAAATATCTGTCAAATGTTGTACCCTGGAGATTCTTGAGCTGTTGTGGGATGATTATCGTTCTGGTCACCTAAATGCAGTAGCCGAGCAGTATCTCATTACAAAGGAGCTTAAAGAAGAGCTTGATATGGAGACCATAACCTTAACAACAACTATCTTGGAGATGGACTACTTGGCATGCAAAATGTCTTTAATGCCTAAAATTTCAGagttcgagttaccggggttctactgtataccATTTGAGCCAATTGGGAGTTGTTCATTGAGAAAACATGCAGACTCCATGGTCGAAATGCCTAAATTTAATCGTTACAGTTATGCTGTTGTTAACCATTCCAAGGGAAAGCTTCTGGCTCCTCAAGCTGAAGCTCTTCAATGCCTTCAGGTGTTCTTTGAACGATATCCAGCAGGACGTATTGGTCTGATTTCTATGCCAATAGGTTCAGGAAAAAATGGAGTAATCAGTTGCCTTCCCTACTTCTTAGGAAAATTAGGATTGAAACAGCCTCATGAGGAAGGTGCCCCTCCATACGGAGAGCCCCTTCACACGTTTGACAAACCAGTACTGGTTATCGCACCAGATCTGAGAATTTTAAAGCAACTTGAAGGTGTACTGACAGTTTCTTCAGATGCACCAGGTGAGAACTTTCTCTTAAAGAGAGGAATAGTACCATCGATTGCCCAGCGGGATGTCCTTCCAAACAGCCTGAAGATTGAGGAAACCAGCCTAGTCCATCAACCCGAATACCTTGAAAGCAACGAAGTCATTATTACGAATGCGCAAAAGTTTCTGAAGGCCGACTGGGAATATGCCCTCCCTGATGACATCTTCAAGCTTGTCATTGTCGATGGGGCTTATCACCATCCGGCTAGTACATGGCATAGAAtcattcaaaaatttaaaaatcatgcaatggttgtattttttactgcaaGTCCTTTCATAGGTGATGGGCAGCGCGAACTAGAAGACGACGAAGGGGAAATGGTTTATAGGTTGTCCCTAGAAGATGCAAGAGGAGCACGAGTAATTCGAAGGATAACCTGGGTTCCACTTCACAGTGAGGACACAGATCTCAACAGTATATTTACACTCATCCTTGAGCGTGTCAAGTCCATTCAGCAAAAAAAGGATCAGCAACATCCCCTGCCTGACAATATTCCTCACATGGCTATTGCCATAACCAAGAACATCGCCTTTGCAGAGCAAGTGAGAGACCTGTGGAACAAGAACTGTGGCAGCCCTAATTCTGCAATCGCTTACCATTCAGATGTGCCCAAGAAAGCAAAGCTGGCCATGATGCAAGTAATAAAAACCAACCAAGTACAGCTAGTGGTGGTGGTTGATATGCTGCGGGAAGGATTTGATCACCCACCCATCAGTATAGCAGCCATTATGACCAAGATCGTCTCCCCTGTTAAGTTTGCACAGTTTATTGGAAGGGCTCAGAGAATTGTACGTGTTCAGGAAGGTCCTGAGTCAGACAAAATTTGTGCAGATGTTGTAACCCACAGCTACTTCCAACAGGAGAAAAACTACTTGGCATTTGAAAATGAGGCACTCATTCCAGATGTCTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006668 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR050742 all species →	Family	Helicase and Restriction-Modification Enzyme	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47396 all species →	TYPE I RESTRICTION ENZYME ECOKI R PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAL9967667.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.