Gene detail

Detailed information of KAL9967777.1 in Oculina patagonica

Genomic Location: chr7:24394444...24411810
NR annotation: CAH3172974.1, unnamed protein product [Porites lobata]
Species abbreviation OPATA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-ACROYT_G026069.t0

CCCTCAAAACTGTTTTATGATGGCCGTCGATCATTGGAAAACAATTTAGCATTTTCCTCGCTTTCCAGtaatttttggtaattttaccAGTGTGAAAGTGAAGAAGGACCATCCATGAATCCTTCAATAGCAAAGAAAACGCAGGAAACCTTGGGGAAGGTTATAAAGAAACCTCCTCTAACGGAGAAATTGCTGAGCAAGCCTCCATTCCGATTTCTTCATGACATCATTACCGAGGTGGTCAAGAATACTGGTTTTCTCAAAGGCTTGTATACGGCTGACGAGATGGACTCCGCGAAAGTCAAGgaaAAAGAAGCCAAGATCCTTTTTCTTCAAAAAGCAATTGACGTCGTAGGAATGATAAATGGACAGCTGTCAGTACGTCCGTCAAAAATTGTGGCTGGTcatgaaccagaaaagacaaatgAGTTCTTACAAGTGATGGGAATGGCCATTTTGCATAAAAAAAGTAGCACTGATGCAGTGAAAAAGGTACTGGCAGGAGAAAAACCTGGAAAAGAACCAAGTGATAGCAAGAAAAAAGAATCCAGAACGGGAAGTGGAAGTAAAGACAGGGAAAGCTCAAAAGAGAGAGACAAGGAGAAAAATAAAGAGAGAGACAGAAGTAGAGACAGAGAAAAAGAAGATGACAAAGACAAACGAAAACAGAGTGAGTCTTCCAAGAGGAAGGAGAGTTCTTCTAACAAGACAGACAGTTctgataaaagaaaaagagatgaTTCAgccaagaaagaaaaagagaaagaaagggAGAAGGAAAAACAGTCGGAAAgaggaagagaaaaagaaaagcagcCAAGAAAAGATGACGATGTTGATGGTCTTGATGGGGGAGCTGCTGTAATAGATGGTGAATTAGAGAATGGAGATGTACCTCCGAATCGCATTCCAAGACCCTCCTCTGCCAAAGGTCAGAGACGCAGACCATCAGGGGAGGGAGAGGATCTTCGAGAAGCTGAAAGTGATGGCCCACAGGCAGAAGAACAACCCAGACCAACTGAACACATGAATGGAGTATTAAATGATGATGAACTCCCTCCTCAAGTCATAAAAAGTCGCAGCATAGCAAGACCAAGCAGTGCAAGACCTGCCCCGCCCAAGATTAAAAAGCAACAAGAGGAGCTCGAAGACCAGATGGCCAGaattGGATCAGGAAAACAAGTTGCCAGTGTTATTGTAGACGATGGCAAGGACCAAGATGATGAGGATGATACATTTGTTGTGGAAGATACGCATGCAATACAAAATGACTTAGATTTGGCGCCAGCGGGAGAAGTTGCTGAAGATGATGGTGAACATGgggGTCTCGTTAGGAAAATTCTTGAAACTAAAAAAGAACTTGAAGGTGGTGGAAACCAAGAAGCTAGACCGAAGCAGGAAAGACAAGCACCAATTATATCAGATGCTGCGAGGAGAAAAGAAAGGGAACTTGCACAAAAAGAGatAGAAAAACTTAGAACTAGTATCCAGACACTTACAAGAAGCGCAAATCCACTAGGAAAAATTATGGACTATATTCAGGAAGATATGGATAGCATGCAAAAAGAATTAGACATCTGGCGGAGAGAAAATAAGGAACATGAAATAGCGTTAAGAAGAGAAGAAAGCATAACAGAAAGTGAGATCGCACCCTTAAAATCACAGCTGGGAGAACTAGACACAGAAATAACAGAAATGGTCGATAGGATAAGCACAGTAAAGTGTAACATCTTGAGAAATGACGAAAAGATACAGAAAATGCTCTCCAGCGTATCATTAACATCAAGATGAAACCAAAGGGACTGCAATGACGCGATgcttgtaaaaatgtaaaatattgcTCCTTGTAAACAGCGCATGGAGCGGTTACTGTACAAAAGAACTCTCGATTTGAGTatttattttactgaaaaagtcCTCTCTATGATAGGATCTTGGTAGAACACTCTAACATTAGCTGAAATCCTCTGTTTCATGAGTTAAGGTGGCCCTCAGGCTCTCAAAGGAGTCTAGAGCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q149C2	TRAF3-interacting protein 1 OS=Mus musculus OX=10090 GN=Traf3ip1 PE=1 SV=2
Q6PGZ3	TRAF3-interacting protein 1 OS=Danio rerio OX=7955 GN=traf3ip1 PE=2 SV=1
Q5XIN3	TRAF3-interacting protein 1 OS=Rattus norvegicus OX=10116 GN=Traf3ip1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005016 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10243 all species →	MIP-T3	Microtubule-binding protein MIP-T3 CH-like domain	Domain	Interproscan
PF17749 all species →	MIP-T3_C	Microtubule-binding protein MIP-T3 C-terminal region	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042576 all species →	Homologous_superfamily	TRAF3-interacting protein 1, N-terminal domain superfamily	Interproscan
IPR040468 all species →	Domain	TRAF3-interacting protein 1, N-terminal	Interproscan
IPR018799 all species →	Family	TRAF3-interacting protein 1	Interproscan
IPR041476 all species →	Domain	TRAF3-interacting protein 1, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31363 all species →	TRAF3-INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0070507 all species →	Biological Process	regulation of microtubule cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19680	TRAF3IP1, IFT54; TRAF3-interacting protein 1	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.