Gene detail

Detailed information of KAL9968678.1 in Oculina patagonica

Genomic Location: chr6:2345288...2363039
NR annotation: CAH3120603.1, unnamed protein product [Pocillopora meandrina]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G020796

ATGTTTACACATGTTGTTAATGATATAACTGTTTCCATGTTCTCTCCCGAAGACAACGAAACTGCTTTTAGGTCCATTAAGTTAATAATGGACTGCAATCAGAGAAAGTCGAAACATAATGTGCAAGATCCAAGAGCTGTTGTTGTGTTAACGCCAGTGAAACTTTTGGTGTTTGACTTACTTTCATCATCTGCAAAGCCGTCATCATTTGAAGTTCCCTACACATTCAACATACATGAGTCTCCAGTGACTTGTACACAGTTTTGTAGTGATTGTCCTCGGGATTTTATTATGGCTCTGGAATCAACAGCAAGTAGCCGCACACGTAAAAGGCAGTTACAGAGGGGAGAAAGCACCCAGGCATGGCCCATAGCTGGTGGAATCTTAGGAGAATCACCGGAGTTTGCTACCGGCTCTGAACTCGTTATCACTGGTCATTCAGATGGGTCTGTAAAGTTCTGGGAGGCCTCGTCAGCTGTCTTGAGATGTCTCTACAAACTGTCAACAAGCAAAGTATTTGAGAAGAACACAAGTCAACCTGAGAGCAGTGAAACAAATGGTAAAGATGGCCAGTCTGAAGGCAACGGCAGCACAAGCAGTGAACAGTCACCGCCTTCAATGGTTGACATTGACTGCTATGCTGTCAACATGATAGAACTATGTATCAGAAGTCGGACACTTCTAGTGGCAGGCACTAGCCATGTTATAGTCTACCAGTTTAGCACTGTGGAAGAGACACTAGAATTTGTGCAACTTGACATCAATCTTTTGTTTGACCTGGGTATGGATTTGCTACCAGACTCTGATGTCCAAAGCCCGACTGAGGATAAAGGAGAGGAACTGGTACTCAGTCCCACCTCAGCCTCCATGACTGTGTCATGTCCCACTCTAACATGTAAAACTGGTTTGTACAAGAGGTCACCTGGATTTCAGCCCACTGTCTGTTGCATGATTCCATCAGTTGGATCAGACACAGTACCACTCAGCAACATGGCTGTTAGCTCAGAGTTTGGAGTGATTTCTATCAGCAATGGACCCTCTTTAGCATTGGTTGATATAGTTCAAAAGAAACTCATTACAGTGCTGTCAGCCCAAGATATGTGTGCTGTGTCAGAATCCCCGTCATCATCAGCAAATTCAGCAACGATGCCTGTGACAACTGGCATGCCTATATCATTCACTATGAATGCTGATGGCTCAGGGGGGAATTCCACGTTGATCTTAACTCAAAATCTGAGAGAAGGAAAAGCCGCCCCCCTCGACCACCTCCCCCGTGGCCCCCCTGACAGCATCAGCTGTGTGCGGTTTGCCTGCACCTTCACTAAAAAGAATGACAATTTAATCAGCCCGTGCTTGTGGGTTGGAACAGTCTTTGGAAATGTGTTCGTTGTTGTGCTTAACCTGCCTGTCAGAGAACAAAGAGAGTCGCAGCCTGTGCTAACAATTACCACAGGGACGTTATGTCAGCCCAAAGCAGGCATGATTCTCAGCATGGCTATCCTTGACAGTCAGGGACATCTCTTTCCATCTCCATTCCAGTTCTGGAAAGAAAAAGATTCACAGCACAATAAGAGGAACTCTTTACTGACAAGGGAGTTACTCGACAAACACTTTGTTGTTATTTGTACGGACAGAGAAGCCAAGGTGTATTCATTACCCACAACCCACGCTAATCCCAAGACTTTCTCAGAAGCTAACCTCACGGATGACTCGGCCGTGTTACTCAAGGCAGATGCTGTTGTTGTTCAAGGTAGTAGCTGCTTGTTGTGTCTTAACAGTCTTGGCAAGCTGCTCGCGTTAAGCCTGCCGAACCTGTCACCGTTATTGGACGTGGAATGCTCGTTCCTCATGAAGGACTACAGATTTCTCAGGACGCTTGTGTTCTCTGAGGATGCCCAAGCAGTCATTTTGTGTTCACCGTTTGAGATCCAGAGGCTTTCAATGTTTGCGAGACCGGGGATGCTGACAGAGAACCAGGGATCATTATTTCGTGCGGTGGAGACACCTGAACCTCCCAGCAAAGGTTTCTTTAGCAGCTTGTTCAGCACTGCTGCTTCACCACTTGATAGAGAGCAGCTCTTTGGCACAGAAAGCGGGAATGCGTCCCGTAGTTTGACCAATCGGTTTAATGGCCCTGGAATGGAGAAGCTGCAAGAGACGTCCAGCGGATTAGCTGGTGTTGTGGCCAGGAACAAACAGGCTCTTATGGAGAGAGGTGAAAAACTCTCGGAGCTGGAGATGAAGACTGGAGAAATGAATATTCGTGCCAAGGCCTTCGCGGACGCCGCCCATCAACTGTCGCGCCAATACAAGGATAAGAAGTGGTACCAGGTCTGA

Transcript

rna-ACROYT_G020796.t0

ATGTTTACACATGTTGTTAATGATATAACTGTTTCCATGTTCTCTCCCGAAGACAACGAAACTGCTTTTAGGTCCATTAAGTTAATAATGGACTGCAATCAGAGAAAGTCGAAACATAATGTGCAAGATCCAAGAGCTGTTGTTGTGTTAACGCCAGTGAAACTTTTGGTGTTTGACTTACTTTCATCATCTGCAAAGCCGTCATCATTTGAAGTTCCCTACACATTCAACATACATGAGTCTCCAGTGACTTGTACACAGTTTTGTAGTGATTGTCCTCGGGATTTTATTATGGCTCTGGAATCAACAGCAAGTAGCCGCACACGTAAAAGGCAGTTACAGAGGGGAGAAAGCACCCAGGCATGGCCCATAGCTGGTGGAATCTTAGGAGAATCACCGGAGTTTGCTACCGGCTCTGAACTCGTTATCACTGGTCATTCAGATGGGTCTGTAAAGTTCTGGGAGGCCTCGTCAGCTGTCTTGAGATGTCTCTACAAACTGTCAACAAGCAAAGTATTTGAGAAGAACACAAGTCAACCTGAGAGCAGTGAAACAAATGGTAAAGATGGCCAGTCTGAAGGCAACGGCAGCACAAGCAGTGAACAGTCACCGCCTTCAATGGTTGACATTGACTGCTATGCTGTCAACATGATAGAACTATGTATCAGAAGTCGGACACTTCTAGTGGCAGGCACTAGCCATGTTATAGTCTACCAGTTTAGCACTGTGGAAGAGACACTAGAATTTgtgCAACTTGACATCAATCTTTTGTTTGACCTGGGTATGGATTTGCTACCAGACTCTGATGTCCAAAGCCCGACTGAGGATAAAGGAGAGGAACTGGTACTCAGTCCCACCTCAGCCTCCATGACTGTGTCATGTCCCACTCTAACATGTAAAACTGGTTTGTACAAGAGGTCACCTGGATTTCAGCCCACTGTCTGTTGCATGATTCCATCAGTTGGATCAGACACAGTACCACTCAGCAACATGGCTGTTAGCTCAGAGTTTGGAGTGATTTCTATCAGCAATGGACCCTCTTTAGCATTGGTTGATATAGTTCAAAAGAAACTCATTACAGTGCTGTCAGCCCAAGATATGTGTGCTGTGTCAGAATCCCCGTCATCATCAGCAAATTCAGCAACGATGCCTGTGACAACTGGCATGCCTATATCATTCACTATGAATGCTGATGGCTCAGGGGGGAATTCCACGTTGATCTTAACTCAAAATCTGAGAGAAGGAAAAGCCGCCCCCCTCGACCACCTCCCCCGTGGCCCCCCTGACAGCATCAGCTGTGTGCGGTTTGCCTGCACCTTCACTAAAAAGAATGaCAATTTAATCAGCCCGTGCTTGTGGGTTGGAACAGTCTTTGGAAATGTGTTCGTTGTTGTGCTTAACCTGCCTGTCAGAGAACAAAGAGAGTCGCAGCCTGTGCTAACAATTACCACAGGGACGTTATGTCAGCCCAAAGCAGGCATGATTCTCAGCATGGCTATCCTTGACAGTCAGGGACATCTCTTTCCATCTCCATTCCAGTTCTGGAAAGAAAAAGATTCACAGCACAATAAGAGGAACTCTTTACTGACAAGGGAGTTACTCGACAAACACTTTGTTGTTATTTGTACGGACAGAGAAGCCAAGGTGTATTCATTACCCACAACCCACGCTAATCCCAAGACTTTCTCAGAAGCTAACCTCACGGATGACTCGGCCGTGTTACTCAAGGCAGATGCTGTTGTTGTTCAAGgtAGTAGCTGCTTGTTGTGTCTTAACAGTCTTGGCAAGCTGCTCGCGTTAAGCCTGCCGAACCTGTCACCGTTATTGGACGTGGAATGCTCGTTCCTCATGAAGGACTACAGatTTCTCAGGACGCTTGTGTTCTCTGAGGATGCCCAAGCAGTCATTTTGTGTTCACCGTTTGAGATCCAGAGGCTTTCAATGTTTGCGAGACCGGGGATGCTGACAGAGAACCAGGGATCATTATTTCGTGCGGTGGAGACACCTGAACCTCCCAGCAAAGGTTTCTTTAGCAGCTTGTTCAGCACTGCTGCTTCACCACTTGATAGAGAGCAGCTCTTTGGCACAGAAAGCGGGAATGCGTCCCGTAGTTTGACCAATCGGTTTAATGGCCCTGGAATGGAGAAGCTGCAAGAGACGTCCAGCGGATTAGCTGGTGTTGTGGCCAGGAACAAACAGGCTCTTATGGAGAGAGGTGAAAAACTCTCGGAGCTGGAGATGAAGACTGGAGAAATGAATATTCGTGCCAAGGCCTTCGCGGACGCCGCCCATCAACTGTCGCGCCAATACAAGGATAAGAAGTGGTACCAGGTCTGAGATTTTAATCACTTGGAGCTGCCAAGCCTGTGGTGCTATTACCTTTCCTGTGCCGTACACATCAGTTACCTTCGTCTGTTCCGTGTAATGACATGCAGTTAGACCTTCATACATAACTTATTGTTACTAGTTTTCGCGGGACTTATTTTTCGTgatttttcgcgatttcaaaaacgtgaaattaaaGATCCGCGGAAAGAAGTCATCGCGAAAATTAAAGACTCGAAAATTTTGACTGTCGCGTCATTCTTCTAACACTATTATTCTGAGggttccttcaatttgaaagggGGTTTTGTGCACGACTTAAATTTCGtgacatttttcttttcctttttgttttgcgcgaaattaagtttccgcgaaaataattaacaataaggTATCTATGGATGTAAGGAAATCTTTGCGGCATCTAGAAAACGAAGGCATTTGAATAGATATGAACGCAGTGATCGTTTGCCAGTTTATTAGGCAAAACTACAATAATCTTTTATTTTACAGCGAGCACAAAAAAATAACTCgtgaaatatttaaagaaattagTAAATCctctgttttctattgttaatAGACATTAAGGGGTTCAAAGTATTGCATCTAGCAGTTGAGATTGAACTGGTGCAAGGTCTTGTAACATTTGTGTTTAATACAAGTCATATattgtaaaaatgttcaaatAGAATACTAGTTATCGACAATTCATGATGTTTAACAGGAATTAGAAAGTACAATGTTTCTGCCATTAAAATGGATGACATTATTTTGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WU70	Syntaxin-binding protein 5 OS=Rattus norvegicus OX=10116 GN=Stxbp5 PE=1 SV=1
Q5T5C0	Syntaxin-binding protein 5 OS=Homo sapiens OX=9606 GN=STXBP5 PE=1 SV=1
Q8K400	Syntaxin-binding protein 5 OS=Mus musculus OX=10090 GN=Stxbp5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004407 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08596 all species →	Lgl_C	Lethal giant larvae(Lgl) like, C-terminal	Repeat	Interproscan
PF00957 all species →	Synaptobrevin	Synaptobrevin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000664 all species →	Family	Lethal(2) giant larvae protein	Interproscan
IPR013905 all species →	Domain	Lethal giant larvae (Lgl)-like, C-terminal domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR042855 all species →	Domain	v-SNARE, coiled-coil homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10241 all species →	LETHAL 2 GIANT LARVAE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0017157 all species →	Biological Process	regulation of exocytosis	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0045159 all species →	Molecular Function	myosin II binding	Interproscan
GO:0050708 all species →	Biological Process	regulation of protein secretion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAL9968678.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.