Gene detail

Detailed information of KAL9968871.1 in Oculina patagonica

Genomic Location: chr6:4943774...4952565
NR annotation: XP_020622755.1, uncharacterized protein C3orf26 homolog isoform X1 [Orbicella faveolata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CZT6	Protein CMSS1 OS=Mus musculus OX=10090 GN=Cmss1 PE=2 SV=1
Q2T9Y1	Uncharacterized protein C3orf26 homolog OS=Bos taurus OX=9913 PE=2 SV=1
Q5FVR6	Protein CMSS1 OS=Rattus norvegicus OX=10116 GN=Cmss1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007021 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14617 all species →	CMS1	U3-containing 90S pre-ribosomal complex subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032704 all species →	Family	Protein Cms1	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24030 all species →	PROTEIN CMSS1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14784	CMS1; protein CMS1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.