Gene detail

Detailed information of KAL9969217.1 in Oculina patagonica

Genomic Location: chr6:9966222...10005575
NR annotation: XP_022781393.1, tudor domain-containing protein 1-like isoform X3 [Stylophora pistillata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G021409

ATGCAGCGAACACCGACTTGTCAGAATTGCTGCAAGAGTTACGGCTTTAAAGATGTGTCCAAGCCGATTGGTAACCGCATCCCTTTACTGTTGGAATGTGGCCACACCTTCTGTGAGGGATGCATCACCAAATGGGCTAGATTACAGAAAACACAGGTCTTGTGTCCAGAATGTCAGAACTCCACTCTCCTGGCAGCTGAGGGAGAGAAGGGGGTGAGGGGCATCCCGCCCAATATCTACTTGTTGGGAGTCATGACGAATACCAAGAGAGCTTCATATCGAAGTGATGTTCAAAAGTCTGGTCGTTCAAAGCTCGGAACCAAGGCAGGACTGCAGAGAGCGATTAATCAGTTTGCACAGGAAAAGAAAACTGAACTAATGAAAACTGACACTGGTGTGAAATGTGAAGAGTGTTCCAGAGGAACAGCATCATGTAGCTGCAACAAGTGTGAAACAGTGTATTGCAGTGCTTGCTTTGAGAGGGTACATTCATATTCAAATGCGTTGCGGAAACATGTCCCCTCACCTGTTACACAAACAAACAGTGAGACAGCAGTTGGTTGTCCTGATCACAACAACAGGCCTCTAGAGTTTTATGACAAGGATGTTGGTCAGCCTGTGTGTTCACACTGTGTGGTTATAGGAGAAAGACAAACCCATGCCATTGTTCCCATTGATGAAGTTGCTAAAGATGTTCAAGCTCAGTTCAAAGCATCAGTTGAAGAAGTTGCTCCTATAATCAAACAGCTGGACAAGTCAGTACAGAAAATTTGTAGAGCTCTTCCCGAGGTGAAGGCTGAAAAGAATCACATTGTGAATGATATAAGGGAGCACTTTCAGAACTTATACGCTGCATTGCAGACAAGAGAACACTCACTGATCAAAGATGTTGAGTTAAATCACAATGGTGAAAAGATTCTGGAGAAACTGCGAGAAGAAGTTACGGATAATTTGCGAAAGGCAAAAGGTTATGTTCAAGATTTGGAAAATATGATTGGACAGCCACAAAAGTTGATTGACAATGCAAGAAAGTTACGGAGTGAGCTGGAAAGTGTTCAAGAAATGTCATGTTGTGCAGTAGAAGTACCTTCACCTGGAGATGAAGTGAAGTTTGAAGCTGGTAAAGAGTTGCAAAACAGCATTTCAGAGTATGGTTCAGTGTCAACAGATGGATGTGCAAGATTTGAGTTGAAGAAAATAAGTGAAGTGACTGAGAAAGACTTGAAAGAAGACAGTGATGATTCAGAACCCGAGCTCCCAGAGGCCTCAGAGAATCAAGAGGAAGTTGAAAGCACAGAACAGTCTGACGAAAAATTACAACATACTGGAACAGCAAGATCCATTACAGCTGCAAAGATTCTCAAAGCTAATCTTGCATATCGTCATGAGATGGTGCTGGTGACTCACATTCGAGATCCCTGCCAGTTTATGATTCAGAGAGTTGCAGACTTGGAACAACTCCAAATCATGATGAACGTCATCAACATTTACTGTGACAGTACAGAGAACGTCCATGATCTCCTTTATGATGTCAAAATTGGTGACATGTGTTGTGCACAGTTCACTACTGATAATCAGTGGTACAGAGCATGCATCAAAACTGCATATTCACCAGCTCATCCCAATGTTGTACCAACACTGGAGAATAATCTGTGTGTTGAAGTGCAATACATTGATTATGGAAACAGTGAGTGGCTGCCACTTAGCAGGCTAAGAAAGATGAAAGATGAATTTCTGAATGTTCCTGAACTTGCACAGTGTTGTTCCTTGGCAGACATTGTACCTCCATTCCAGGAGGAAAAATGGCCCCCAAAGGCAACAAAGGCATTTGGAAGTCTCACTGGAGATAAACCTCTGTTAATGACTGTGATTGGGAAGAAAGGCAGCAAACTGGTTGTTGATTTGCGGCGCCCTGAGGATGACGAACCAACTCAAGATGATGACAGGCCAGTGTCTGTCCGTGATGCTCTTGTTTTCTTAGAAGTTGCACGTTTCTCTTCCCCTGCTTCAAAACCTGAAGGCCTATTCTTTCCTAAGAAGACTTACAAAGAACCAGTGCCTATTGGGGAAGGAGCGTTTGTTGATGTGCTAGTTACACATGTCGCAGCACCTGATGAGATCTTTGTACAGAAGCTGCGGAGCGAGGAGTCACGTGAGCTGCAACACATTATGGAGGAAATGGGCAAGATGTTTGGTGGGAGGAGGCGTGGTACCGAGTGGAGTGTACCATGGCCTTATAAGGGTTTAGTTTGTGCAGCAAGATTTACAGAAGACAAGGTCTGGTACAGAGCTTTGGTTACAGCTGTGAACAGTGACGAGACAGTGGATGTAACTTACGTAGACTTTGGAAACTCCGAGAGACTACCATTTGCTGACATCAGAAAGCTGCCAGACATGTTTCTTAGACTGACAAAGCAGGCATTGCTTATTTGTCTGGCGGACATCAAGCCTAATGGTGAGAAAACAGAATGGCAGCAACAGGATCAAGTGAATATATCAAGCCTGCTGTTGAATAGATCTTTAGTCGTCGATGTTAAAGGTGTTGTAGATGACAAGATGTCTGTTTTGCTGTATGACACCACAGGCACACAGGACGTGTGTATCAACGAGTTCCTCGTGCACAATGGTTACTGTCAGACGGCTGGATTAGGTTATGTGACGGAAAAAGAAGCGACAGAAAAGACAAAAAATATAGAAACAGAAAAAGTGCACGGAAAACGTAGCATTTCTCGGATTCTCGCATGCTCATTCAAGCGTTCTTTCAGCATTGTAAAGAGCCGAGATGAACTAACAGCTGAAAATGAGAACGCGGCGAAGAACAGCGAAGAGCAAACAGAACCGGAGCAAACAGCAGACGAAACAGATAGCCTACAGGAGAATGCAACAGAGTCTGACATTCAAGGCGAGCTGTCCAGTCAGACAAGTTCATTCACAGAAGAGGAGAAAGTTTTATCTGAAGAAAAAGTGGAGTCACAAGCTAATGAAATGCCAGTCTCGTCTGCGGATTATCAAGAGTTCAAATACAAACCAGCTACCGTACCTGACAGAAACAGATTTCAGGCCGGTGTCACCTTTGTGGATTCTCAGGGATATGTTTATGCTCAAGAAGTGAAGGAAGGGGACCGTACGTTGATAAACATCATGGGAACCTTGTTAGAAAGGTACGGTAAAGGCGAAGACCTGTCGGCGGCGCCGTCTGATGCCACAACAGTGTTTCCAGGCCTGCCCTGTGTTGCTCAGTTCACAGAGGATGGTATGTGGTACCGTGCAAGGGTGGTGAAGTTTGTGGAGGAGGATAAGGTGGAGGTGAACTACGTTGACTTTGGTAATTCTGAGGTGGTGTCGCTGTCCGCATTAAGACAAGAGATGCCTTTTATGGAAGTGCCACAGCAGTGTCTTCAGCTTGTGTTACGAGGCATAGAACCTAAAACCAGTGATGGTCACTGGCCTCCTGAGGCCATTCGAGCGTTGTCTCAGGCTGTTGTGGGGCAGGACTGTGTAGCAACTGTGAGGGGTGACAAACAGCCTGGCTACCCACTGGTAGTGAAATTGTGTCTTCCTGATGGCTCTGACGTGGCACAGACTTTGTTAAACAGGGGCCTGGTGCAGAAAACTTCGCTGCTTGAAGAAGAAGGAGCAGAGTCTCCCCAGTTCTACCCGAGAAAGAGAGGGCCTGGTAAATCGAAGCCAATCGTGTCAAAGCGATCAATTACTGAAACCAGGGCGCACGCTCAAATGATCAGTTCACGGGAAGCTGAATGCATGCTGGCTCACACTGAGCTGCCTGGGGATGGCATCCGCTTTGACGTCACCATCACGCACATAGAACGACCTGACTGTATTTTCATCCAGCGGGTTCCGCCCACAGACATGGACAAAGGGTTCTCTGATGATCCGGACCCCACCCTAGAGGATGCGGCCGAAGAGCTGCGAATGCTTGAGGAAATAATGGCGAAGATAAATAGTGCGGATTATTTTAAAAACTACACTCCACTGATGACTGCTAGCGAAGGAATGTTGTGCTGTGCGCGTTATACTGAGGATGACACGTGGTACAGGGCTCAGGTGAAATCAGTTGTACGTCAGAGGCCTCTGGAGGTACGGGTACTGTACGTGGATTATGGCACAACTGAGGTAGTCAAGGCTGACAGGTTGCGGGGGTTTCCGTCGGAGTTGCTGGATTTGCCGATCCAGTCTACGCGCTGTTTTCTTGCTGACGTCAGGCCCCCAGGCGCCACAGAGGGACCAATGATGGATGATGAGTGTTGGCCTGTGGCCACCATGGAGACGCTTATACAGTTGGTGGCCGGCAAGAAACTCATGGCAAAAATGCTGTTCAGTGGTCCACCGGCCAGTGTGATGTTGTACGAACATAAAACGAGAAGCGATGGCTGCACCGAAGAAGTATCGATTGGGCTGCTGCTGGCTCAGAAGGGCCTGGCTACGTGTACGGATTACGAGAAAGCCACATACGCGGAGTCCGACTCCACTGTCGACGAGAGCTGTGAACCTGAGGAAAAAACTCTGGAATTCCAAGAATCGGAGCTAATGTTTACACCAGACGTCTCAGAGACTAACGCAGAGTCCAAAAGCTCTTCATCTGCTGATTTGCTGGAGAAAATTCTCCATCCTAAAGTGAGCTTTACTCCCCCAAAACAACAACTTTTAAAACCTACAGAGTTGACAACGAAGAGCGCAGATCAAACGTCTAAGGACTGTGACATTGTAGAGAAGCCCACAGAACTCGGTAGTTCTTCTGTTAACACTGACGATGGAAGCTCCTCGCAAACGACAACGAACGAAACCAAGTCACGTGACAATGAGGAGACTCCACCTCAGTCCGAATCGTTAGACCACGTGACCGAAATGACGTCAGCCGATACAGAAGTCAATGAACATTCTGTTGAGTCTTCAGTATGA

Transcript

rna-ACROYT_G021409.t1

ATTTGAAGGGCTCTTTCTGCAGAGAGGCAGGTCAGATCAAAGTCATTTTAAAGGGACGTAATTTCTTCATTTCCCTGAGTTATGCAGCGAACACCGACTTGTCAGAATTGCTGCAAGAGTTACGGCTTTAAAGATGTGTCCAAGCCGATTGGTAACCGCATCCCTTTACTGTTGGAATGTGGCCACACCTTCTGTGAGGGATGCATCACCAAATGGGCTAGATTACAGAAAACACAGGTCTTGTGTCCAGAATGTCAGAACTCCACTCTCCTGGCAGCTGAGGGAGAGAAGGGGGTGAGGGGCATCCCGCCCAATATCTACTTGTTGGGAGTCATGACGAATACCAAGAGAGCTTCATATCGAAGTGATGTTCAAAAGTCTGGTCGTTCAAAGCTCGGAACCAAGGCAGGACTGCAGAGAGCGATTAATCAGTTTGCAcaggaaaagaaaactgaacTAATGAAAACTGACACTGGTGTGAAATGTGAAGAGTGTTCCAGAGGAACAGCATCATGTAGCTGCAACAAGTGTGAAACAGTGTATTGCAGTGCTTGCTTTGAGAGGGTACATTCATATTCAAATGCGTTGCGGAAACATGTCCCCTCACCTGTTACACAAACAAACAGTGAGACAGCAGTTGGTTGTCCTGATCACAACAACAGGCCTCTAGAGTTTTATGACAAGGATGTTGGTCAGCCTGTGTGTTCACACTGTGTGGTTATAGGAGAAAGACAAACCCATGCCATTGTTCCCATTGATGAAGTTGCTAAAGATGTTCAAGCTCAGTTCAAAGCATCAGTTGAAGAAGTTGCTCCTATAATCAAACAGCTGGACAAGTCAGTACAGAAAATTTGTAGAGCTCTTCCCGAGGTGAAGGCTGAAAAGAATCACATTGTGAATGATATAAGGGAGCACTTTCAGAACTTATACGCTGCATTGCAGACAAGAGAACACTCACTGATCAAAGATGTTGAGTTAAATCACAATGGTGAAAAGATTCTGGAGAAACTGCGAGAAGAAGTTACGGATAATTTGCGAAAGGCAAAAGGTTATGTTCAAGATTTGGAAAATATGATTGGACAGCCACAAAAGTTGATTGACAATGCAAGAAAGTTACGGAGTGAGCTGGAAAGTGTTCAAGAAATGTCATGTTGTGCAGTAGAAGTACCTTCACCTGGAGATGAAGTGAAGTTTGAAGCTGGTAAAGAGTTGCAAAACAGCATTTCAGAGTATGGTTCAGTGTCAACAGATGGATGTGCAAGATTTGAGTTGAAGAAAATAAGTGAAGTGACTGAGAAAGACTTGAAAGAAGACAGTGATGATTCAGAACCCGAGCTCCCAGAGGCCTCAGAGAATCAAGAGGAAGTTGAAAGCACAGAACAGTCTGACGAAAAATTACAACATACTGGAACAGCAAGATCCATTACAGCTGCAAAGATTCTCAAAGCTAATCTTGCATATCGTCATGAGATGGTGCTGGTGACTCACATTCGAGATCCCTGCCAGTTTATGATTCAGAGAGTTGCAGACTTGGAACAACTCCAAATCATGATGAACGTCATCAACATTTACTGTGACAGTACAGAGAACGTCCATGATCTCCTTTATGATGTCAAAATTGGTGACATGTGTTGTGCACAGTTCACTACTGATAATCAGTGGTACAGAGCATGCATCAAAACTGCATATTCACCAGCTCATCCCAATGTTGTACCAACACTGGAGAATAATCTGTGTGTTGAAGTGCAATACATTGATTATGGAAACAGTGAGTGGCTGCCACTTAGCAGGCTAAGAAAGATGAAAGATGAATTTCTGAATGTTCCTGAACTTGCACAGTGTTGTTCCTTGGCAGACATTGTACCTCCATTCCAGGAGGAAAAATGGCCCCCAAAGGCAACAAAGGCATTTGGAAGTCTCACTGGAGATAAACCTCTGTTAATGACTGTGATTGGGAAGAAAGGCAGCAAACTGGTTGTTGATTTGCGGCGCCCTGAGGATGACGAACCAACTCAAGATGATGACAGGCCAGTGTCTGTCCGTGATGCTCTTGTTTTCTTAGAAGTTGCACGTTTCTCTTCCCCTGCTTCAAAACCTGAAGGCCTATTCTTTCCTAAGAAGACTTACAAAGAACCAGTGCCTATTGGGGAAGGAGCGTTTGTTGATGTGCTAGTTACACATGTCGCAGCACCTGATGAGATCTTTGTACAGAAGCTGCGGAGCGAGGAGTCACGTGAGCTGCAACACATTATGGAGGAAATGGGCAAGATGTTTGGTGGGAGGAGGCGTGGTACCGAGTGGAGTGTACCATGGCCTTATAAGGGTTTAGTTTGTGCAGCAAGATTTACAGAAGACAAGGTCTGGTACAGAGCTTTGGTTACAGCTGTGAACAGTGACGAGACAGTGGATGTAACTTACGTAGACTTTGGAAACTCCGAGAGACTACCATTTGCTGACATCAGAAAGCTGCCAGACATGTTTCTTAGACTGACAAAGCAGgcaTTGCTTATTTGTCTGGCGGACATCAAGCCTAATGGTGAGAAAACAGAATGGCAGCAACAGGATCAAGTGAATATATCAAGCCTGCTGTTGAATAGATCTTTAGTCGTCGATGTTAAAGGTGTTGTAGATGACAAGATGTCTGTTTTGCTGTATGACACCACAGGCACACAGGACGTGTGTATCAACGAGTTCCTCGTGCACAATGGTTACTGTCAGACGGCTGGATTAGGTTATGTGACGGAAAAAGAAGCgacagaaaagacaaaaaatatagAAACAGAAAAAGTGCACGGAAAACGTAGCATTTCTCGGATTCTCGCATGCTCATTCAAGCGTTCTTTCAGCATTGTAAAGAGCCGAGATGAACTAACAGCTGAAAATGAGAACGCGGCGAAGAACAGCGAAGAGCAAACAGAACCGGAGCAAACAGCAGACGAAACAGATAGCCTACAGGAGAATGCAACAGAGTCTGACATTCAAGGCGAGCTGTCCAGTCAGACAAGTTCATTCACAGAAGAGGAGAAAGTTTTATCTGAAGAAAAAGTGGAGTCACAAGCTAATGAAATGCCAGTCTCGTCTGCGGATTATCAAGAGTTCAAATACAAACCAGCTACCGTACCTGACAGAAACAGATTTCAGGCCGGTGTCACCTTTGTGGATTCTCAGGGATATGTTTATGCTCAAGAAGTGAAGGAAGGGGACCGTACGTTGATAAACATCATGGGAACCTTGTTAGAAAGGTACGGTAAAGGCGAAGACCTGTCGGCGGCGCCGTCTGATGCCACAACAGTGTTTCCAGGCCTGCCCTGTGTTGCTCAGTTCACAGAGGATGGTATGTGGTACCGTGCAAGGGTGGTGAAGTTTGTGGAGGAGGATAAGGTGGAGGTGAACTACGTTGACTTTGGTAATTCTGAGGTGGTGTCGCTGTCCGCATTAAGACAAGAGATGCCTTTTATGGAAGTGCCACAGCAGTGTCTTCAGCTTGTGTTACGAGGCATAGAACCTAAAACCAGTGATGGTCACTGGCCTCCTGAGGCCATTCGAGCGTTGTCTCAGGCTGTTGTGGGGCAGGACTGTGTAGCAACTGTGAGGGGTGACAAACAGCCTGGCTACCCACTGGTAGTGAAATTGTGTCTTCCTGATGGCTCTGACGTGGCACAGACTTTGTTAAACAGGGGCCTGGTGCAGAAAACTTCGCTGCTTGAAGAAGAAGGAGCAGAGTCTCCCCAGTTCTACCCGAGAAAGAGAGGGCCTGGTAAATCGAAGCCAATCGTGTCAAAGCGATCAATTACTGAAACCAGGGCGCACGCTCAAATGATCAGTTCACGGGAAGCTGAATGCATGCTGGCTCACACTGAGCTGCCTGGGGATGGCATCCGCTTTGACGTCACCATCACGCACATAGAACGACCTGACTGTATTTTCATCCAGCGGGTTCCGCCCACAGACATGGACAAAGGGTTCTCTGATGATCCGGACCCCACCCTAGAGGATGCGGCCGAAGAGCTGCGAATGCTTGAGGAAATAATGGCGAAGATAAATAGTGcggattattttaaaaactacACTCCACTGATGACTGCTAGCGAAGGAATGTTGTGCTGTGCGCGTTATACTGAGGATGACACGTGGTACAGGGCTCAGGTGAAATCAGTTGTACGTCAGAGGCCTCTGGAGGTACGGGTACTGTACGTGGATTATGGCACAACTGAGGTAGTCAAGGCTGACAGGTTGCGGGGGTTTCCGTCGGAGTTGCTGGATTTGCCGATCCAGTCTACGCGCTGTTTTCTTGCTGACGTCAGGCCCCCAGGCGCCACAGAGGGACCAATGATGGATGATGAGTGTTGGCCTGTGGCCACCATGGAGACGCTTATACAGTTGGTGGCCGGCAAGAAACTCATGGCAAAAATGCTGTTCAGTGGTCCACCGGCCAGTGTGATGTTGTACGAACATAAAACGAGAAGCGATGGCTGCACCGAAGAAGTATCGATTGGGCTGCTGCTGGCTCAGAAGGGCCTGGCTACGTGTACGGATTACGAGAAAGCCACATACGCGGAGTCCGACTCCACTGTCGACGAGAGCTGTGAACCTGAGGAAAAAACTCTGGAATTCCAAGAATCGGAGCTAATGTTTACACCAGACGTCTCAGAGACTAACGCAGAGTCCAAAAGCTCTTCATCTGCTGATTTGCTGGAGAAAATTCTCCATCCTAAAGTGAGCTTTACTCCCCcaaaacaacaacttttaaAACCTACAGAGTTGACAACGAAGAGCGCAGATCAAACGTCTAAGGACTGTGACATTGTAGAGAAGCCCACAGAACTCGGTAGTTCTTCTGTTAACACTGACGATGGAAGCTCCTCGCAAACGACAACGAACGAAACCAAGTCACGTGACAATGAGGAGACTCCACCTCAGTCCGAATCGTTAGACCACGTGACCGAAATGACGTCAGCCGATACAGAAGTCAATGAACATTCTGTTGAGTCTTCAGTATGATTGACAAAAAAGTACCAAAAAAGAGTTTAATAATATGGATATTATGGAGTTTACAAGAGAGGAAAATGATTTATTTCTTGGATTTCTAGTTTCGTTGCCCAGTTATGGGTTCCACGCCGGTTAACAGGACGTTTTTTCGAGGACGCACTTTTTCTTGTTCGTGAAGTTGTGTCCGACATTGTCTAACGGTGGATTATTTCTTGTCGTGTTTTTTTGTGGCAAGACTGACGTAGGCCAAGTTTTCGAACTCAGGTTTGGTTAATTCAGAAAAGTATTCGGTCAGACTTCAATAAACAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BXT8	RING finger protein 17 OS=Homo sapiens OX=9606 GN=RNF17 PE=1 SV=3
Q4R3G4	RING finger protein 17 OS=Macaca fascicularis OX=9541 GN=RNF17 PE=2 SV=2
Q99MV7	RING finger protein 17 OS=Mus musculus OX=10090 GN=Rnf17 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003362 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR039117 all species →	Family	RING finger protein 17	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16442 all species →	RING FINGER PROTEIN 17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18405	TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.