Gene detail

Detailed information of KAL9969301.1 in Oculina patagonica

Genomic Location: chr6:11169830...11174403
NR annotation: XP_020630777.1, uncharacterized protein LOC110067786 [Orbicella faveolata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-ACROYT_G021500.t0

AGCACGTTTTCCGGCTAAGCGAAGCGTGCTTTTGCAGTCTTGCATGCTGTTGTACTGATTTCACTGTCAAGTTTGTATCAGTGATTCATCGAAGCggctttttatcattttgtataGTTTATTCTACACTATGGAGCCTCAAATGCTCGTAAACCAAGGCCTCAGCGAGAGCGTTGCGCAACGCATGTCTGAAATCTTCACTTGTGGGCTTCTTTCGCCCGAGGAACTCGATGACAGAGCATTCGAAGCTCTTCGAGAATTCAACCAAGAAGGCGCTCTAGAAGTGTTGGATCAGTTTGCAAATAGCGATTTGTCACATGTGCAGAACAAGAGCGCTTTCCTCTGCGGAGTGATGAAAACTTACGTGACAAAATCTGCGACGAGCGGCGAAGCCACAAGCAACGAAGCGACGAGCAGAGCGGATGAAGGCAAAGTCAAGGCTTTACTGGACAGGACTGGCTATACGTTAGATATCACCTCGGGACAGAGGAAATATGGAGGGCCACCGCCTGGCTGGAATGGACCTATGCCTGGTACAAGTGGTAGCGATAAAGGTTGCTGTCAGGTCTTTGTTGGAAAGATCCCTCGCGACTGCTTTGAAGATGAGATCATTCCGCTCCTTGAAGATTGTGGTCAGGTCTACGACTTCCGTCTGATGATGGACCCCGAATCAGGGCTAAACAGAGGATTTGGTTTTTGTACATACACAACCAAAGCTGGAGCACAGAACGCAGTCAAGAAGCTTGATAACAAAGAAATCAGACCGGGAAAGAAGTTGGGAGTTTGTGTCTCGGTCGCAAACAATCGTCTCTTCGTTGGTTCCATTCCGAAGAGCAAATCCAAGCAAGAAATTTTCGATGAATTTTCAAGAGTTACTTCAGATCTGACTGATGTGATTGTTTATCTGTCGCCCGAGCAAAAGGGAAGAAACAGGGGCTTCGCCTTTTTGGAATACGAAAGCCACAAAGCAGCAGCATTGGCAAAGCGCCGCCTTCAGTCTGGGAAGGTGTACGTCTGGGGGATGACTGTTGCTAAAGTTGAATGGGCTGATCCCCAAGAAGAACCAAATGACGAGGTTATGGCCAAGGTGAAGGTGGTCTATGTTCGAAACCTCTCTCCAAACATTTCAGAAGAGAAACTGCAGGAAGAGTTTGGCAAGTTTGGAACTGTtgaaagagtaaaaaaaatcaaagattaTGCTTTTGTTCACTTCACTGAGCGCCAGAATGCATTAAATGCCATCCAATCACTCGACAGTCAGCTCTGGGATGAGATTGCTATAAGCGTGTCCCTGGCAAAGCCCCAACCTGCCAACAAGGACAACAAACGACGAGGAGGCCCCGGAATGGGTGCAGGTCCTCGTGGCAACCAACCACGTGGTGGAGGGCCAAGGGGTAGAGGTCGTGGTAGAGGTGGTGGTGGATATGACCAAGGGTATGGTAACAGTGGCGGGTACGACTCGTATGGCGGTGGAGGCTATGATGATGGGAATAGTTATGGTGGTTATTATGAAGACAACAGCTATGGGGGAGGTGGTGGGTATGGAAGTAGCTATGGTGGTGGCTATGGCGGTGATGAATATGGTGGTAGTGGTGGAAGAGGGGGCTACTCCAGTCGAGGTGGAGGAAGAGGCGGTCCAAGGGGCTCGTACTCCCGTGGAGGTCAAGGTGCACCTAGCAGAGGTGGACCAAGAGGTGGCGGCAGTGGTGGTGGCGGCTTCGGTCGTGGAGGTAGAGGCTCACGTGGTGGTCCTCCAAGAGGAAGGGGTGGGGAAGGTGGCGGAAGGGGCTTTGGTGGCCCACAAAAGCGCAAGTTTGGTGGTGACAGCTATCAAGGGGGTGGTGGCTATTCCGAACCAAAGAGGCCGTATGTTGATTACAGCCACCAGTATGGCCAGCAGGAGACACAGCAGCAGTGGGGCCAAGACTACAGCTACAGTGACCAGGGTGATCAACAGTGGCACCAAGACAGCTGGTCTCAACAGCAGTGGTAGAGATTGATCAGATTGGCAGCCATTCAACCTATCCAACCAGATTTATGATGAATTGATCCAATTGTTTTGTTTGGAGcccaatcatttctttatctTTGATTGGATTGGAAGCTGCGTCAAACTTAAAGAAAACGGCACATCATTTGATGTCacgttttgttctgtttttagTAAAACATCCTGCATCGCAAATGCATTCAAAATACTTTAAAAATTGATACCGTCAGAACGTAAGAGTTAAAAagtccaaaacaaaattgtgtaGCATTTCCCATACCTGTGTAGTTCACTCCAAAGTGTATTTTCAACTTATTTCATCAAATTTCAAATTCtactttttaagttttaattaaGAACAAGCACCTTACTCCAAATTAGATTAGAAAAAGGTAAAACCTTAAGGATTGCAAAGCTTTGACAAATTTAGTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TMK9	Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus OX=10090 GN=Syncrip PE=1 SV=2
O60506	Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens OX=9606 GN=SYNCRIP PE=1 SV=2
O43390	Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens OX=9606 GN=HNRNPR PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001390 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18360 all species →	hnRNP_Q_AcD	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR041337 all species →	Domain	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Interproscan
IPR006535 all species →	Family	HnRNP R/Q splicing factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21245 all species →	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAL9969301.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.