Gene detail

Detailed information of KAL9971672.1 in Oculina patagonica

Genomic Location: chr5:2473889...2482915
NR annotation: XP_020604525.1, nuclear pore complex protein Nup98-Nup96-like [Orbicella faveolata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G017869

ATGGAAGAATACGAGCACGAACAACTCGATGAGATGTTGCAAACCTTCTACACAGAAATACGCACAAAAGACGGGTTTGAATACGAACCTGAGAGTTTAAAATCCATGCTGGCAGCCCTTGACCGCTATTTAAAAGAACACGGCTACAAGTACTCGATAATTAGAGACCGAGAGTTCCACCAGTCCAAATTGGTACTTGAAGGAAAAGTGAAGTGTCTCCGACAGCAAGGAAAAGGCAAAAGACCCAACGCCGCGAACGCACTGACAACCGAGGAAGAAGAAATGCTATGGAGTGAACAAAGTCTCGGTGACTGCAGCCCAAGAGTTCTTTCCCAGACGATGTGGTGGCTCTTGACTCAACATTTTGGCCTGAGAGGAAGACAGGAACACCACTCAATGGAAGTCGAGGACTTTAGTTTTTGTGTAGACGACAGCGGCACAGAGTACGTCACATTTAAAGAGAATCCTACAAAAACGAGGCAGGGAGGACTTAACACAAAACATCGTAGTGTTCTGCCAAAAATGTTCGCTACTGGCGGTCAGAGATGTCCCGTTGAGTTGCTGAAGCAATACCTCAGTAGACGTCCTCAAGAGCTGCGAGAAAAAGGTCCTTTTTACCTTGCCATAATTGAAAACCCCAAAACAAATGTTTGGTACAAGAAGCAGCGCCTTGGCGTAAACAGTATCGACAACATGATGAAGAGCGTTGTAAAGAACACAGCTCTGGAGAAAAGCAAGAAGAGATTGACTAACCACAGCGCAAGGAAGACGGTTGTGAAGAAACTGAGGGCAGCAAGCGTCGAGAGGCAGTCGATAATCCAGGTGACTGGACACGTAAGCGAGAAATCTCTTAACGACTACGATGAAGGTAGCGAGAAGGAACAGCAACAACTCTCCAACATTATCAGCATGCCTCCACAGTCAGCAGCTTCGAGCAGTTTCGCAGGTGTACCCGCAATGCCGTCTTTTCCCGCTACAACTTCAAGAGGTGAACAGGAAAGCGATCACTTGAAGTGTATCTTCAGTTATTTGACCGGCAGGCAGATCAGCAAGGCTTGTCAAGTGGCACAGCAACATGGCGACTATCGACTGTCACTTCTGTTGTCACAAGTCACAGGGAATGCAGTGACAAGAAATCTTCTCTACAAACAGCTGGCTGACTGGCAAGAGTTAAAGGCGGATGTTTTCATTAATCCAGAGAGAATAAAAATCTACGCTTTGCTCGCTGGCGCAATGGTGTGGGATATATCACGTGACACGGCCAATATACCACGTGAGGAACTTCAAAGTATATCACGTCACGTGGTCAACGTCTGCGAGAGACTGGATTGGAAAAGAGTTCTGGCTGTTCACTTGTGGTACTACTGTTCGCCAACATCTTCAATATCAGACGCTTTAAGAGCGTACGATACTTCTTTCAAGGGAAGCACGAACAACGGTAGATACGGCGCTCCTCCTCATCCGCCATTTATGGAAGACGAGGACGAACAGACGGATGAAGAAAACAAGTTCGTTACAAGAGATACCTGTTATCATTTGTTAAAACTCTACTGCAAAAGATCGCACAGACTGGAGAGACTTCTGTCGCCGTCAACTTCCACTGCATTGCAGCTGGATTTTAGACTGAGCTGGCATTTGTACCAGGTCCTTCAATCGCTCGAGTACACGCATCTTTCCCAGGAACACGCGGGAATGTTACACAGTGGTTTTGCTGCTCAGCTGGAGGGACTGGGTCTGTGGCATTGGGCTGCTTTCGTCTTGTTGCATATCCAAGAACCAGCGCGGCGAGAGCACGCAGTCCGGAGCCTTCTGTGTCGGTACTGCAGTTTGTCAGCGGATCATGCGTACGTGGAGAAAGAACGATTCATGTTAGATGATTTGAAAATTCCCGCCGAGTGGATACACGAAGCCAAGGCTTTGCGTGCACGCTTCGAAGGAAGAACACGTGAAGAAGCTTTTCATCTCGTCAAGGCGCGCCACTGGAGCCTGGGACATAACGTTATTCTGCGCAACCTTGTTAGTGACGCAATCATCAACGCGGAATACGACTTTTTAAAAACGTTGCTAGGAGAACTGGAACCAAGGGATCGTAGTTCAACCGTGAGAGACTGGGCAACAGGCGGCCAGGTCTTTTTGGATTACCTTGCCCTTGTGGAAAAGTTCCAAGACATCACAAAGGAAAACTTCGTGCCAACAAAGTATGACTGGGAAGATATCCACGCCGAAGTTTCTTCTCTTTGTAGGAGAATCAACAATTTACCCTCCGACACACCCAAGAACATGTTGTGTCAATACGATATGGCTAAGATGTGCGCCAATTTTCTGAAGATTGTCATGAACGAATTGACGGACCTTGCAGATGAAAGGGAGGCCCTTTTGCCGACTCACGTGCTGGTACCTCACGTGACTAAGCTACCCATGCCCGAGGACTGCACTCTGGAGGAACTGCGTCAACTGATCCCGAGTTATATCACAGAAATAACTACTGGCTATTAA

Transcript

rna-ACROYT_G017869.t0

ATGGAAGAATACGAGCACGAACAACTCGATGAGATGTTGCAAACCTTCTACACAGAAATACGCACAAAAGACGGGTTTGAATACGAACCTGAGAGTTTAAAATCCATGCTGGCAGCCCTTGACCGCTATTTAAAAGAACACGGCTACAAGTACTCGATAATTAGAGACCGAGAGTTCCACCAGTCCAAATTGGTACTTGAAGGAAAAGTGAAGTGTCTCCGACAGCAAGGAAAAGGCAAAAGACCCAACGCCGCGAACGCACTGACAACCGAGGAAGAAGAAATGCTATGGAGTGAACAAAGTCTCGGTGACTGCAGCCCAAGAGTTCTTTCCCAGACGATGTGGTGGCTCTTGACTCAACATTTTGGCCTGAGAGGAAGACAGGAACACCACTCAATGGAAGTCGAGGACTTTAGTTTTTGTGTAGACGACAGCGGCACAGAGTACGTCACATTTAAAGAGAATCCTACAAAAACGAGGCAGGGAGGACTTAACACAAAACATCGTAGTGTTCTGCCAAAAATGTTCGCTACTGGCGGTCAGAGATGTCCCGTTGAGTTGCTGAAGCAATACCTCAGTAGACGTCCTCAAGAGCTGCGAGAAAAAGGTCCTTTTTACCTTGCCATAATTGAAAAccccaaaacaaatgtttggtaCAAGAAGCAGCGCCTTGGCGTAAACAGTATCGACAACATGATGAAGAGCGTTGTAAAGAACACAGCTCTGGAGAAAAGCAAGAAGAGATTGACTAACCACAGCGCAAGGAAGACGGTTGTGAAGAAACTGAGGGCAGCAAGCGTCGAGAGGCAGTCGATAATCCAGGTGACTGGACACGTAAGCGAGAAATCTCTTAACGACTACGATGAAGGTAGCGAGAAGGAACAGCAACAACTCTCCAACATTATCAGCATGCCTCCACAGTCAGCAGCTTCGAGCAGTTTCGCAGGTGTACCCGCAATGCCGTCTTTTCCCGCTACAACTTCAAGAGGTGAACAGGAAAGCGATCACTTGAAGTGTATCTTCAGTTATTTGACCGGCAGGCAGATCAGCAAGGCTTGTCAAGTGGCACAGCAACATGGCGACTATCGACTGTCACTTCTGTTGTCACAAGTCACAGGGAATGCAGTGACAAGAAATCTTCTCTACAAACAGCTGGCTGACTGGCAAGAGTTAAAGGCGGATGTTTTCATTAATCCAGAGAGAATAAAAATCTACGCTTTGCTCGCTGGCGCAATGGTGTGGGATATATCACGTGACACGGCCAATATACCACGTGAGGAACTTCAAAGTATATCACGTCACGTGGTCAACGTCTGCGAGAGACTGGATTGGAAAAGAGTTCTGGCTGTTCACTTGTGGTACTACTGTTCGCCAACATCTTCAATATCAGACGCTTTAAGAGCGTACGATACTTCTTTCAAGGGAAGCACGAACAACGGTAGATACGGCGCTCCTCCTCATCCGCCATTTATGGAAGACGAGGACGAACAGACGGATGAAGAAAACAAGTTCGTTACAAGAGATACCTGTTATCATTTGTTAAAACTCTACTGCAAAAGATCGCACAGACTGGAGAGACTTCTGTCGCCGTCAACTTCCACTGCATTGCAGCTGGATTTTAGACTGAgCTGGCATTTGTACCAGGTCCTTCAATCGCTCGAGTACACGCATCTTTCCCAGGAACACGCGGGAATGTTACACAGTGGTTTTGCTGCTCAGCTGGAGGGACTGGGTCTGTGGCATTGGGCTGCTTTCGTCTTGTTGCATATCCAAGAACCAGCGCgGCGAGAGCACGCAGTCCGGAGCCTTCTGTGTCGGTACTGCAGTTTGTCAGCGGATCATGCGTACGTGGAGAAAGAACGATTCATGTTAGATGATTTGAAAATTCCCGCCGAGTGGATACACGAAGCCAAGgCTTTGCGTGCACGCTTCGAAGGAAGAACACGTGAAGAAGCTTTTCATCTCGTCAAGGCGCGCCACTGGAGCCTGGGACATAACGTTATTCTGCGCAACCTTGTTAGTGACGCAATCATCAACGCGGAATACGACTTTTTAAAAACGTTGCTAGGAGAACTGGAACCAAGGGATCGTAGTTCAACCGTGAGAGACTGGGCAACAGGCGGCCAGGTCTTTTTGGATTACCTTGCCCTTGTGGAAAAGTTCCAAGACATCACAAAGGAAAACTTCGTGCCAACAAAGTATGACTGGGAAGATATCCACGCCGAAGTTTCTTCTCTTTGTAGGAGAATCAACAATTTACCCTCCGACACACCCAAGAACATGTTGTGTCAATACGATATGGCTAAGATGTGCGCCAATTTTCTGAAGATTGTCATGAACGAATTGACGGACCTTGCAGATGAAAGGGAGGCCCTTTTGCCGACTCACGTGCTGGTACCTCACGTGACTAAGCTACCCATGCCCGAGGACTGCACTCTGGAGGAACTGCGTCAACTGATCCCGAGTTATATCACAGAAATAACTACTGGCTATTAATACTGCGGGCAGTGAAGAGAGCAGGCACCAGGCCTAATGGCTAAAAATCCGAGGAAACGGTTGATGCTGCGAGACGAAACAAGTAACAGACATTTGCGAGGAAGCATTGACAGGCTTACTGTTAGCGGTAGCCTTTGTAAGATCTTACAGTGCAAAGCAGTAAAGTTTCGTGCTAAGTGGCTGTAAGAAACGAACTAATTGAAAGCTTAACCAAATAACTGCAGCCGTAGATTTCCCAATGACTCAGAAAACAGACAATTCAAGCTGAGCCGTTACGTTTTGTGTGAAGTTCGCTGCTATTAGAAACTTGTAATTTGAAAATTTAGCCGAATAAGTCAACAACTTCATCCGTAGCCTTTCCGCGAGCTCATTGTACAATGCAGTGAAGGCTGGTGTGAAGTTAACAGAATCAGTGAGGGTTCTCCCACGAGATAATTCCTGCAGACATTTTATAGTTAATAACACTGCGGGATGACACCCCGGCGAGTGACAGGATTTAATAGTCTGAACAAACTCTTTTGTCGGGGAGAGATGGAGAGAAGGCCGTTGAGTGTGgagaagggggtggggggtgggttGGGGCTTTTCTCTTCACCCTATCCCCCACCTATCAGCCCGTTCACAGGCCAATTGCTATGAATCGGTGCATGtataaatgatttattcatgATTACTTTTATAAACACTCCTAACCATCCGCCGTCACTGTTAATCTAAATAAAGAGATTCTTTTTCTGGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49793	Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus OX=10116 GN=Nup98 PE=1 SV=2
Q6PFD9	Nuclear pore complex protein Nup98-Nup96 OS=Mus musculus OX=10090 GN=Nup98 PE=1 SV=2
P52948	Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens OX=9606 GN=NUP98 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002191 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12012 all species →	DUF3504	Domain of unknown function (DUF3504)	Family	Interproscan
PF12110 all species →	Nup96	Nuclear protein 96	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR021893 all species →	Domain	Domain of unknown function DUF3504	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR042838 all species →	Family	Uncharacterized protein KIAA1958	Interproscan
IPR021967 all species →	Domain	Nuclear pore complex protein NUP96, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46963 all species →	SIMILAR TO RIKEN CDNA E130308A19	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAL9971672.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.