Gene detail

Detailed information of KAL9972093.1 in Oculina patagonica

Genomic Location: chr5:7468926...7479171
NR annotation: XP_020619908.1, hsc70-interacting protein-like [Orbicella faveolata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-ACROYT_G018335.t0

ATGCGTGAAGGATCATGGTCCGTCGAATCTGAAAGTGTGTTTTCTAGCAGTGGTTGTGACTGTTGTGTAGGGAGCAAAATGGCCTCCAAATTTGATGATGTGCAGCTCGCTTTGCTCAAGCAGTTCGTGGACCTGTGTAAACAAAAGCCGGAAATGCTTCATGCTCCACAACTACAGTTTTTTAAAGACTGGCTTGAGAGCCTTGGTGCCAAGATCCCTCCACCACCAGAGAAGCCAAAAGAACCAGAACCTGAACCAACTCCAAAGCCTAGTGAAGAACCAACACCAACACCAACAACAGAAAGTGAAGAACCGAAACCACCACCAACAACTGCAGAAAATGAAGAACCCATGCCTGAACCATCACCTGAAGAGCCGGCAGAAGCAGAAGAACCCATGGACAGTGAAAGCGAAGAGAGTGATGTTGAGATTGACCGGGAAGGATGCATTGAACCAGACAATGACGAACCTCAGCAAATGGGAGATTCAAGCATTGAGGTTACCGATGAAATGAGGGATGAGTCAAACGAAAAGAGAAGTGAGGCCATGATGGCTATGAGTGAAGgaAACCTTGAGGAGGCTGTTAAGCTTTTTACAGAGGCCATCTTGAAAAACCCATCTGCCAGCATGTATGCTAAACGTGCAagCTGTTTTATTCGCATGCAGAAGCCAAATGCTGCCATCAGAGACTGTGACGAGGCTATCAAGATCAATCCAGACTCTGCCCCGCCATACAAGTGGAGAGGACGAGCACATAGaCTTTTAGGTCATTGGGCAGAGGCAGCAAAGGATCTCAGTATGGCTTGCAAACTGGACTACGATGACACAGCTAATGAGTGGCTTAAGGAAGTCAAACCCAAGGCGCAACTCCTTGCTGAGCACCATAGAAAATATGAAAGGAAACAAGAAGAAAAGGccgaaaaggaaaaaatggACAGATTaaaaaaggcaaaagaagCACAAGAAAAAGCAAGAAAGGAAGAAGAAGAGAGGAAAAAACAGCAGGAAGAGTCGGCTGGAGGCTTTCCCGGAGGCTTCCCTGGAGGCTTCCCTGGGGGCTTTCCCGGAGCAGGAGGATTCCCTGGGGGTGCCGGGGGATTCCCTGGAGGTGCTGGGGGATTCCCTGGAGGTGCTGGGGGATTCCCTGGGGGTGCCGGGGGATTCCCTGGAGGTGCCGGGCAATTCCGTAGTCCTGGAGGTGCCGGGGAATTCCGTAGTCCTGGAGGTGCAGGGAGTGCAGGGGGATTCCCAGGATCAGCCACTGCAGGTGGCCAAACACCAAACTTGAACGATCTCCTCAGCGATCCAGACTTGTTGGCCGCATTTCAGGATCCAGAGGTAATGGCAGCCTTCCAAGACGTGAGCCAGAACCCACAGAACATCTCGAAATACGACCACATTCCCAAAGTGAAAATGATCATCGAAAAACTGGCCAAGAAGTTCGGTCCCGCGGGAGCTGGCCCGCCGCCCGGCAGCGGTTTTCCCGGCGGTATGCCGTTTGGTAACATGTTCGGTGGCCAATAACATTGGCATTAGCTTTCTTTTCGACAAATGGATAAACGAAGTCTCTTAGAGTCAAAGATATTCGTGATTTTCATAAATACGACGAGAAAATTGTTTGTGGACGTTTACATGTTTGACGTATTTTACTTTAAGAAAAGCACAAAACGCAAGCATGTTTAATGGAAATGTTAAGCTAGGACTGTCTTTTTTGTACTAGAGGGTGATTAAAACTTCAAAAGTTTGTCTGATTCTGTTAGgaaaaatgatgttttgtttgTAGTTTTTATGTTAAACGTGCTTTACAGTAGCAAAATTCTAAGCGCCTATTAATTTTACACTTGATATTCTAACCTGCTTCAAGCAGCACAGCAAGGAAGAAAATCGTAATGACCAGTTTAAAAGTTCAGTGTGAACTGAAACAGGTGAAGTGACACTGATCACATATATTCTAACTGCTAACGAACGTGTAgctacaataaataaataaatcacatTAATCATGTCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZLF0	Hsc70-interacting protein OS=Gallus gallus OX=9031 GN=ST13 PE=2 SV=1
Q5RF31	Hsc70-interacting protein OS=Pongo abelii OX=9601 GN=ST13 PE=2 SV=1
Q99L47	Hsc70-interacting protein OS=Mus musculus OX=10090 GN=St13 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005981 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18253 all species →	HipN	Hsp70-interacting protein N N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006636 all species →	Domain	Heat shock chaperonin-binding	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR034649 all species →	Domain	Hsp70-interacting protein, N-terminal	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45883 all species →	HSC70-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030544 all species →	Molecular Function	Hsp70 protein binding	Interproscan
GO:0051085 all species →	Biological Process	chaperone cofactor-dependent protein refolding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09560	ST13; suppressor of tumorigenicity protein 13	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.