Gene detail

Detailed information of KAL9972691.1 in Oculina patagonica

Genomic Location: chr5:15781599...15785241
NR annotation: CAH3178411.1, unnamed protein product, partial [Porites lobata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G019051

ATGAACAACTCTAGTCACATCGATCCTAATGAATATCCGTCCTGCCCATACGCCGTTTTTATTTCCTTCACAACGGCCATGGCTCTTATCAGCACAGTGGCTTTTACTGGCAACATTCTGGTGATTGTCGCAGTGTACAAAACTCCGAGCCTTAGAATAAGCACCAGCTACTACTATGTCAACACGGCGGTTTCTGATTTTCTTGCCAGTCTCACCAGCTGGCCATTTTTCCTCACTGAAGAAAGCAGTAAAAGTCTACTCCAAAATTCTCTGGCAAATATTGGTTGCAAAGTAGGAGCGTATTTTAGAATGGTATCCTATACAGTATCCGTTCTAAGCCTGGTATTGATCGCTGTCGACAGATTCATCGCTACTGTATTTCCCTTGAAAGCGACGCTAATAACAACAAAAATAAGGACGGTTTTGATGTTTGCAACGTGGTTGATACCAATAGCACATTTCATTCCTGTGATCTTTCATTCCAGGCTTGAAGAAGTTGGTCCCGAAACATTTTGTTTAGTTAGGATGTTCTTGCTACTGGTAACAATTGCAGCAGCGTCACTAGGAGTGCTTATACGATATAGCATTTCAAACTCTGCTAAACGACATCGTTTTGACTCCTTTGCACCGCCTAGGAATGGAAGTCAGGCAAAATGGTATGTGGACGGTGAAGACTATATGGCGGCTGTTGCCGATACGATTGAAGCCGCTGAGAAGGAAATATTCATCACAGACTGGCAACTCAATCCTCATATCTTCATGAGAAGGCCAAGCTCAGGAATCGACAGTTTGCATTGGCGTCTGGACAAGATGTTGCTGAGAAAAGCCGACCAAGGTGTTCGCACATACATATTACTCTACTGGGAATCAAAGAAAATTGCCGGCATGGACCTTGGTAGTGAATATGTACAAACTGTTTTACAGCACGAAAATATCGAGGTTCTTCGTCATCCAGATATGGCTACTCCCCTGACTCATCCTTCCACCCTGCTCCGGTGGAGTCACCATGAGAAAGTGGTCGTTGTTGACCGGAGTATTGCGTTCGTTGGGGGAATCGACCTTTGCTTTGGCCGCTGGGATACTCACAAACACGAGTTGACAGATCCCTTTCCACCCCATCCATGTGCGTTGGAGAGTGAGGAGTGTGAGAGAATTCCTGAGGAATTTACAATGCAATATTCTCGATGGATAGGCAAGGACTATGGTAACACCTTCCTTTATGGAGCAAGAACTAATCTGGATGAACCCATGAAGGATTATGTTGACAGAAGTAAAGATCCTCGTATGCCATGGCATGATGTGGCTTGTTCAGTAACTGGACTTCCTGCACTTGATGTTGCAGAACACTTTATTCAGAGATACAACAATATCAAACCCGCCCCAGCATGGTACAATTTTCAAGATGGTCATCAGCTATCCCCGGATGATGTCCTCCCGAATACTGTGCTTCATCAGATTCCAGAGCCAAGTGGTAGCAATCTTACAGTCCAGGTTCTTCGATCAGTGGATGAATGGTCAGCAGGTCAACCGCGTGAAGCCTCCATCTACAATGCTTACCTCCACGCAATTCAGAATGCAGAACATTTTATTTACATTGAGAATCAGTTTTTCATCTCATCCCAGAAGGGGACTTTTATGAGTGTGCAAAATAAGGTACTGTCGGCGCTGGCAGATAGAATTTATCATGCCTATCAAAACAGTGAGGACTTCCATGTAATGGTAGTCATGCCATTGAAGCCAGAGTTTCCAGAGGAATGGGACACAAAAGCTGGCAGTGATTTAAGAGCTGTAAGTTACTGGACGTATGCAACCATCTATCATGGGGGCGACTCTTTGATGAAAAGGCTGCAAGAAAAGAAAATTCCTGCTCAAGCAATTCCTCGATTCTTCAGTCTATATGGTTTACGAACACATGGGTCTTTGAATGGGAATCTTGTTACAGAGATCGTGTATGTGCACAGTAAGCTGATGATTGTTGATGACCAACTAGCTATCATTGGGTCAGCGAACATCAACGACCGTAGCATGCTTGGAGACAGGGACTCGGAAATAGCAGTAATTGTACAAGACAATGATATGATGGAAGGAAAAATGAATGGAAAAGCCTACAGAGTGGGAAAATTCTCTCACAGTTTACGTTGCCACTTACTAAAGGAACATCTTGGTCTTTTATCAGAGATGAATACAACACCATTGAATGTCCAGGTAGATGATCCCCTGACAGAAGCTTTCTACGCAACCATTTCACATCATGCCGTGCAAAATACCCTCATTTTTGAGCGAGTATTTCGTCGAAAAATACTCCCAACAAATCAGGTATGGAACTTTGAAGACCTCGAGAACTGGAAATCATTTCCAGGTCTCGCTGACATTTCGCTGGAAGAAGCTAGGAAGGAGTTGGATAACATTCAGGGGAGAATTGTCATCTTTCCACCCTTCTTCTTGAAAGATGTTCTCAAACCATCCTTTTTGGATTACTTGGGTATGTATGTTGATAACAGAGGCCACACCAAAGAACTCAACTTTGATGGAACCACAACAGAAACTTTCTTTGTTTAA

Transcript

rna-ACROYT_G019051.t0

ATGAACAACTCTAGTCACATCGATCCTAATGAATATCCGTCCTGCCCATACGCCGTTTTTATTTCCTTCACAACGGCCATGGCTCTTATCAGCACAGTGGCTTTTACTGGCAACATTCTGGTGATTGTCGCAGTGTACAAAACTCCGAGCCTTAGAATAAGCACCAGCTACTACTATGTCAACACGGCGGTTTCTGATTTTCTTGCCAGTCTCACCAGCTGGCCATTTTTCCTCACTGAAGAAAGCAGTAAAAGTCTACTCCAAAATTCTCTGGCAAATATTGGTTGCAAAGTAGGAGCGTATTTTAGAATGGTATCCTATACAGTATCCGTTCTAAGCCTGGTATTGATCGCTGTCGACAGATTCATCGCTACTGTATTTCCCTTGAAAGCGACGctaataacaacaaaaataagGACGGTTTTGATGTTTGCAACGTGGTTGATACCAATAGCACATTTCATTCCTGTGATCTTTCATTCCAGGCTTGAAGAAGTTGGTCCCGAAACATTTTGTTTAGTTAGGATGTTCTTGCTACTGGTAACAATTGCAGCAGCGTCACTAGGAGTGCTTATACGATATAGCATTTCAAACTCTGCTAAACGACATCGTTTTGACTCCTTTGCACCGCCTAGGAATGGAAGTCAGGCAAAATGGTATGTGGACGGTGAAGACTATATGGCGGCTGTTGCCGATACGATTGAAGCCGCTGAGAAGGAAATATTCATCACAGACTGGCAACTCAATCCTCATATCTTCATGAGAAGGCCAAGCTCAGGAATCGACAGTTTGCATTGGCGTCTGGACAAGATGTTGCTGAGAAAAGCCGACCAAGGTGTTCGCACATACATATTACTCTACTGGGAATCAAAGAAAATTGCCGGCATGGACCTTGGTAGTGAATATGTACAAACTGTTTTACAGCACGAAAATATCGAGGTTCTTCGTCATCCAGATATGGCTACTCCCCTGACTCATCCTTCCACCCTGCTCCGGTGGAGTCACCATGAGAAAGTGGTCGTTGTTGACCGGAGTATTGCGTTCGTTGGGGGAATCGACCTTTGCTTTGGCCGCTGGGATACTCACAAACACGAGTTGACAGATCCCTTTCCACCCCATCCATGTGCGTTGGAGAGTGAGGAGTGTGAGAGAATTCCTGAGGAATTTACAATGCAATATTCTCGATGGATAGGCAAGGACTATGGTAACACCTTCCTTTATGGAGCAAGAACTAATCTGGATGAACCCATGAAGGATTATGTTGACAGAAGTAAAGATCCTCGTATGCCATGGCATGATGTGGCTTGTTCAGTAACTGGACTTCCTGCACTTGATGTTGCAGAACACTTTATTCAGAGATACAACAATATCAAACCCGCCCCAGCATGGTACAATTTTCAAGATGGTCATCAGCTATCCCCGGATGATGTCCTCCCGAATACTGTGCTTCATCAGATTCCAGAGCCAAGTGGTAGCAATCTTACAGTCCAGGTTCTTCGATCAGTGGATGAATGGTCAGCAGGTCAACCGCGTGAAGCCTCCATCTACAATGCTTACCTCCACGCAATTCAGAATGCAGAACATTTTATTTACATTGAGAATCAGTTTTTCATCTCATCCCAGAAGGGGACTTTTATGAGTGTGCAAAATAAGGTACTGTCGGCGCTGGCAGATAGAATTTATCATGCCTATCAAAACAGTGAGGACTTCCATGTAATGGTAGTCATGCCATTGAAGCCAGAGTTTCCAGAGGAATGGGACACAAAAGCTGGCAGTGATTTAAGAGCTGTAAGTTACTGGACGTATGCAACCATCTATCATGGGGGCGACTCTTTGATGAAAAGGctgcaagaaaagaaaattccTGCTCAAGCAATTCCTCGATTCTTCAGTCTATATGGTTTACGAACACATGGGTCTTTGAATGGGAATCTTGTTACAGAGATCGTGTATGTGCACAGTAAGCTGATGATTGTTGATGACCAACTAGCTATCATTGGGTCAGCGAACATCAACGACCGTAGCATGCTTGGAGACAGGGACTCGGAAATAGCAGTAATTGTACAAGACAATGATATGATGGAAGGAAAAATGAATGGAAAAGCCTACAGAGTGGGAAAATTCTCTCACAGTTTACGTTGCCACTTACTAAAGGAACATCTTGGTCTTTTATCAGAGATGAATACAACACCATTGAATGTCCAGGTAGATGATCCCCTGACAGAAGCTTTCTACGCAACCATTTCACATCATGCCGTGCAAAATACCCTCATTTTTGAGCGAGTATTTCGTCGAAAAATACTCCCAACAAATCAGGTATGGAACTTTGAAGACCTCGAGAACTGGAAATCATTTCCAGGTCTCGCTGACATTTCGCTGGAAGAAGCTAGGAAGGAGTTGGATAACATTCAGGGGAGAATTGTCATCTTTCCACCCTTCTTCTTGAAAGATGTTCTCAAACCATCCTTTTTGGATTACTTGGGTATGTATGTTGATAACAGAGGCCACACCAAAGAACTCAACTTTGATGGAACCACAACAGAAACTTTCTTTGTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O14939	Phospholipase D2 OS=Homo sapiens OX=9606 GN=PLD2 PE=1 SV=2
P97813	Phospholipase D2 OS=Mus musculus OX=10090 GN=Pld2 PE=1 SV=2
P70498	Phospholipase D2 OS=Rattus norvegicus OX=10116 GN=Pld2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001609 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13091 all species →	PLDc_2	PLD-like domain	Domain	Interproscan
PF00614 all species →	PLDc	Phospholipase D Active site motif	Family	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR001736 all species →	Domain	Phospholipase D/Transphosphatidylase	Interproscan
IPR025202 all species →	Domain	Phospholipase D-like domain	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR015679 all species →	Family	Phospholipase D family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18896 all species →	PHOSPHOLIPASE D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004630 all species →	Molecular Function	phospholipase D activity	Interproscan
GO:0009395 all species →	Biological Process	phospholipid catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01115	PLD1_2; phospholipase D1/2	EC:3.1.4.4	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.