Gene detail

Detailed information of KAL9979287.1 in Oculina patagonica

Genomic Location: chr4:56631833...56640687
NR annotation: KAJ7381103.1, nucleolar and coiled-body phosphoprotein 1 [Desmophyllum pertusum]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-ACROYT_G016931.t0

CGAGCgtacaagatggcggctgtaccTAGCGAGGTCTACGGACATATTTACTCATTTTTGACGCAAAATAAGTTATTTAAAACAGCGAAGgcattaaaaaaggaaacactAGTGGATTTCTCCTTGCAAGTTGACAGTGACATTGTTGAGTGGTACAATGCATATTTGAGTGTGAATCAGAAGCCTGGGAAAAGGAAGCTTCATGAACTCAGTAGTAATCGACAACCAAAAACAAAGCGTAGGAAGAAGCAGTCGTCTGATTCAGactCGTCCAGTTCAGAGGCATCGAGTTCTGAAGAATCTGCAGAAAAGAAATCAGttaagaaaaagacaaaaacaaacgtGAAAGATGTAACAAGCGAAAAAATGGAATCCAAAGATGACAGTTCATCAGAGTTGAGTTCTGAAGAAGATGAAGAGAAACCAGCTAAGAAagacacaaaaacaaaagtaaaagatgtaaaaatgaaaaaaatggaatccaAAGATGAGAGTTCATCAGAGTCGAGTTCTGAGGAGTCTGAAGAAGAGAAACCAGTaaagaaagaaacgaaaacaaaagTGAAATATGTAAAAAGCAGCAAAAAGGAATCCAAAGATGAGAGTTCATCAGAGTCGAGTTCTGAGGAGTCTGAAGAAGAGAAACCagtaaagaaagaaacaaaaacaaaagtgaaagaTGTAAAAAGCAGCAAAAAGGAATCCAAAGATGACAGTTCATCAGCATCAAGTTCTGAAGAATCCGAAGAAGAGAAACCAGCTAAGAAAGACacaaaaggaaaagaagaaaaaagcaaaatggaAGAATCCAAAGAAAACAGTTCATCAGAGTCGAGTTCTGAAGATGATGAACCTGTAAAAAAAGACACAAAAGTGAAAGACGAGAAAAAGAGCAAAAAGGTAGAAAACAAAGACGACAGTTCATCAGAGTCGAGTTCTGAAGAATCTGAAGAAGAGAAACCAGTTAAGAAAGACAcaaaaagtaaagaagaaaaaagcaaaaaggaagAATCCAAAGAAGACAGTTCATTAAATTCGAGTTCTGAGGAATCTGAAGAAGAGAAACCAGTTAAGAAAGACAcgaaaggaaaagaagaaaaaagcaaaaaaatggaAGAATCCAAAGAAGACAGTTCATCAGATTCGAGTTCTGAAGATGATGAACCCgtAGAATCCAAAGATGACAGTTCAGAGTCGAGTTCTGAAGAATCTGAAGAAGAGAAACCAGTTACAAAAGACACAAAAGCAAACGTGAGTGTTAatggaaaaagcaaaaaatgggAATCCAAGGAGAGCAGTTCATCGGAGTCAAATTCTGAAGAATCTGAAGAAGAGAAACCAGTTACAAAAGACACAAAAGCAAACGTGAGTGTTAatggaaaaagcaaaaaatgggAATCCAAGGAGAGCAGTTCATCGGAGTCAAATTCTGAAGAATCGGAAGAAGAGAAACCAGTTAAGAAAGACACAAAAACAAACCTGAGTGTTAACggaaaaagcaaaaatttgGAATCCAAGGAAGATAGTTCTTCGGAATCAAGTTCGGATGAAGAAGAGGCTGAATCATCTAATGGAAAGTCAAGTTCAGAGCAGTTAGAAGCCACTTTACCAGTCACAAATTCAACAAAAAAGgacacaaagaaagcaaaaattgatgCCAAACCACAAGCATCGTCCACCCCAGTGTTAAATTCAAAGGCTGGTAAACAAAATGGGGAAAGTAAGATTAAAACTCCTTTCAGAAGAGTAAAGGAAGAAGAAGTTACAGTGGACCCAAGGTTAAAGGATAACAGTTTTGAAGCCAAGtttggtTCAAGGGGAGACTGGGGtgaaaaagcaaacaaagaccTAAAGTTTACAAAAGGAAAGTCATTCCGACATGAGAAGACCAAGAAGAAGCGAGGAAGCTATCGTGGGGGCCAAATAAACACAGGGATAAACTCCATCAAGTTCGATAGTGACTaaagtaaattttatttcaGTCACTATATATCAAacttatataattataatatatttttgattAGGTTGTAGAATTGAGTTGAAGTGAGGCACTGATTGCATACAAAATATGGCAAAGGCTTTAAATAAGAAGTAAATTTTGAGAAGATTCATTCGATATAGTTTgatagttagtttttttttctttgtaagatATTTCCTTATAACAAATAAATCTGTGATGTAACATGCCATAGTTCAATTTGCATGGGTACAACGTAGTAAAGGCCAATCTCAATATTTGCAAAATCGTAACTTGGCTTCAAGGCACAGGAAAATAATTGTGTACATAATTATTTATTCATCCCAGGACCTTGATTTGATTTGTATTGTTCGATTGCCCTTGGCCTCAGAGGCAGGTTAAAAATAGTCTATCACACGTTACAAATATGGAAGCTTTTGTGTTTGTTTCACATGCTTCTTCAGTTTTTGAGGAATAGGTTGCCATGGTTAGCATGAAATTATCAAAGACGATATCAATACTCTTTTGTGTCCACGAATCTTGGGCCAAAATGGAGTTAATTCTGTGTTTGTTGGTAGGCGTAATAAGTTAATATGAAACAGGCTAGAGCtaccaacaaacaaacatttttgtacaatttcatAGGGAACATCTCTGTAGTGACTTGGTTGTGAATTATATGGATTAGTAATTGTACTGCACATACAGGAGTCCTTTGTACTGGAGTACGTTTTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14978	Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens OX=9606 GN=NOLC1 PE=1 SV=2
P41777	Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus OX=10116 GN=Nolc1 PE=1 SV=2
E9Q5C9	Nucleolar and coiled-body phosphoprotein 1 OS=Mus musculus OX=10090 GN=Nolc1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004438 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05022 all species →	SRP40_C	SRP40, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039191 all species →	Family	Nopp140-like	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR007718 all species →	Domain	Srp40, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23216 all species →	NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25818	NOLC1; nucleolar and coiled-body phosphoprotein 1	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.