Gene detail

Detailed information of KAL9980507.1 in Oculina patagonica

Genomic Location: chr3:7771146...7779099
NR annotation: KAJ7369420.1, hypothetical protein OS493_039113 [Desmophyllum pertusum]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-ACROYT_G009107.t0

atgtcatctgctaatgttctcccgagtgcccctgcttatggtgatcgcgaagaaacacaactttatccaagcctcccaacaaatgccgagaattttcggctgactgaaataagtaaaattgaaaaagaaatatccgctgaagctgagcattacaggcttgtgttaaaaaaatataaaaaagtccggaaagttattcactattccgtggtctgtcttggcgccgtgacggcagctctgtcttctggagctgttgcgacttcacttactggtgttggaattgttatcggcgttcctgttgcagcagtagcaggtACTTACTCAAATCTGTATAATCATCCTACATTGATCAAGGATTCACCAAAGgTCAAACCGATCAAGTTATCTAAGGCTGGAATTCCACTGGGTGTACTCTCCCAGGGAGGAtcaaacaagcctgtcaaaactAATGAAGATATGGAAGCCGAAGAAATTCAAACCCAGATACCTCACAACACGATCAGGAGCAGGGACGAGACTAAGGAGgagaagaaacaaagaaaacaagaagtcaAGAATGACAGAAAGGTGAGACGAATGGAAAAGAAAGCCAACAAGATAGCTTTTAAATCTGAAAAACAGCGGCAAGAACAGTCTATGTTGCATACAAAACAGCAACAAGGAAAGAAGCTTTGATGATGATTCAATCTCCATCAGTTTTAACGTGAATTGCGATAATGAAAAGAATGTACATATTATAACaactttttacaaaatatacatGTGGCTGGAGATACagaagaagtgttttttttaaaaaaaacagtgacAGTGCAAGTTCTCCAAATCAGAGTTATTCCATCAGcagctattttattttaacagtagtgtaccttattgttacttattttcgcgggcacttaatttcgcgaaaatggaacaggaatatttcgcgagtcttaattttcgcgatttggccaaaaatacgtaattagcataaaaaatacaatagaaatcggttggaattaattttcgcgggtctttaatttcgcgattttttgaaaatcgcgaaaatcgcgaaaattaagtcccgcgaaaataagtaacaataaggtagaagCTTTTGTAATTCTTCTGGTCCTCTAGTaaagcagttgctattgtttcaGGGGCTGGGAGGgactaggggcattgttcctgttttttgttttcttgttctctcgaagggtagcaaGCCATTTATATAAGACGTTGTGAGAGACGCTACCCGACCCAATTCCAGGCGTTTGCACTGAACGCTTTgtcaaaaccaaagaaattactctagccaatcacaaagaacacagacaatccagtaaaccaatcaaaactcgaagaaaatacatgaagccggcacgaagcgcgggaaaacgtgcgcgagcgcgtcatgattggttttggttttacttctgattggctgagaaagtggcgcgagggttttaaaccaatcacaaagcgtagtaatgcaaaaccaatgcaaacgcaaattactttcgacactcaagtgaaaaccgctctaaattcATACAAGCAATCACTTTCTGCGTCAAACAGCACAAtgtattttaaacaaaaactcGCCAAGCTTCCCTAGGGTTCTAGTTACATCTAAGGGGCTAAAATGAAACATGCTCTTTCGCTTAGATATAGGTTTGAGCATGCTGCACTGTGTTTCTTCAACGAATGGTCTACTAAAAAGGGAAACGGCGGGTATATATCGATAGGTTTTTCCACTGTGGTTTTGTTAATAGGTTGGTACCAAGGTGTAGAGCCACGGGTGTTGTTTTCAAAAACCTATTTAAACCACAATTGCTATAAAATTAATATGCCTTTTCACAGGGTTGGTGGTCTAGCCTTGATCCGAAGTGAAATATTCACAAAAGTCAGTCAGAACAtgaactacagtaaaaacccacttATAAGAACCTAGATTTTTCCAACTTAGCCTAAATAAGTTCTTATAGtctttaaatggtatttagtgggaTTTTAGGCTACTTAGGTTCGTATATCGCACCCCGGATGTCAGACTGCAAAATAACGCAACTCTTCAATAATTGTCGATGGAACAAAAACGAGAAgtctcaaaatatacaagaaataaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V838	Protein LTV1 homolog OS=Xenopus laevis OX=8355 GN=ltv1 PE=2 SV=1
Q96GA3	Protein LTV1 homolog OS=Homo sapiens OX=9606 GN=LTV1 PE=1 SV=1
Q5R8B2	Protein LTV1 homolog OS=Pongo abelii OX=9601 GN=LTV1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000893 (this species only)

Pfam domain

No Pfam domain signature was detected for KAL9980507.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR007307 all species →	Family	Low temperature viability protein Ltv1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21531 all species →	LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000056 all species →	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0042274 all species →	Biological Process	ribosomal small subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAL9980507.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.