Gene detail

Detailed information of KAL9985901.1 in Oculina patagonica

Genomic Location: chr2:45929584...45933129
NR annotation: XP_044182045.1, uncharacterized protein K02A2.6-like [Acropora millepora]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G008354

ATGTATCTCTTCGGTCGCAAGTTCGTACTTCGAACTGATCACAAACCCCTGCTGAAGATCTTTGCACCGGACTCTGCTACACCAGTGTTGGCAGCAGCAAGGCTTCAGCGATGGTCACTCCTCCTATCCTCATACCACTACGAGATCGAGTTCAAGCCCTCTGCCGAAGTAGCTAATGCTGATGCTCTATCAAGGCTCCCGCTTAGTTACAAGAAGGATGCAAGCGTCGAAGAGGAAATATTCCATGTAGCCAGCCAGCAGTTAAACAAGCACCCGGTCTCGGCTACAGATATTGCTAGAGAGACTGCAAGGAACCCAACCACCGCAAGGGCCTTGTCTCTGACACAGCATGGTTGGCCTAACAACTTCTGCACCGACCCTAACCTCAAACCATACTTCCTTCGCCGACATGAGCTCTCCTTTGAGCAAGGCTGTCTTATGTGGGGTATGCGAACCATTGTACCACCTACCTTACGACAACCCATCCTGAATGAGTTACACAGAGCACATCCTGGAATCGCACGCATGAAGGCAACAGCCCGCAGTCATGTATGGTGGCCAGGAATAGACAGCGACATTGAGGAGACCGCTCGCAGATGCCAACAGTGCAGTAAGACCAGGAAAGCTCCCCCAGTTGCACCACTATCTCCGTGGTCATGGCCCACCGCTCCATGGCACCGCATACACATTGATTTTGCTACTCATCAATCCAATCATTATCTCATCGTGGTGGATGCACACTCTAAATGGCCTGAAGTAATTGGTCCTATGAAAACCACCACTGCAGAAAGCACAGCCAATGCCCTGCGCAGCATCTTCGCAAGATACGGGCTTCCAACTCAAGTTGTCAGCGACAACGGTCCACCCTTTTCATCCGTTGAAAATGAAGAATTCCTGCAGCAGAACGGTGTTCAGCGAGTACTCGTCTCCCCTTATCACCCATCCTCCAATGGATTAGCAGAGAGATTTGTTCAGACCTTCAAGCACGCCTTGGATTCATTAGCCTCAGATCCTGCCCGCTCTATACAGCAAGGGATACAGAACTTCCCTCTCTCTTATCGCAGTACTCCACACGCCACTACTGGAACTTCACCATCCAAGCTATTCTTGCAGCGAGAGCTACGAACAAGGCTGTCACTCACTAAGCCAGACCTCAGTAGTCACGTGGCCACACAGCAACGCAAGATGAAGTTCTACCATGACAGACATGCCAAGTTTAGAGAACTGTCTGTGGGCGACACTGTTCTGACACGTGATCACTTATCAAAGCAGAAATGGCAGTCGGGTACAGTGTTAAAGCACAGTTCCCCATATTCTTATCAAGTCCAACTAGATGATGGCCGAATTTGGAGACGCCATGTGGATGACGTTCTTCAGAACAATCCCGCCACTGAACCAGCAGAGCCACCAGCAGAACCAGCAGAGCCACCAGCAGAGCCAGCAGAGCCACCACCCATAGTTCCTGTCACCCCCGAACTGCGGAGGTCCACACGTGTTCCGCACAGAGGAAGCTACCAACTGGAAGACTGCGAAAGCAGGAGAAAATGGGTTGAAAAATTCACCTCCGCTTCCCTCTCAAACGTTGGACAATGGTGGGATCCTCGTACTTCCCAGGGATATTCCACTGAAAATCTAACAGGAAATATAGAAAACCCAATAGGATTGGCTAAGATTCCGCTGGGCGCAGCTGGCCCGCTGCTTATCAAGGGAGATTATGTGCAGGATGAACTAATTGTTTGTCCTTTTGCCACAACAGAAGGTGCTCTTGTCGCCTCTGTTTCTCGAGGTGCTACTGCTATCACCAGATGTGGAGGTATCACAGCACGTGTTATAAAGCGCCGGATCACGAGAGTACCACATTTCGTCACTGATTCCATGCACCAAGCTCACCAACTTTCTGAGTGGCTCATTGCTCATTTGGACGAGCTGAAAACAAAAGCAAGCGAGGTCAGCCAGCACTGCAAGCTTCAATCACTGGAACCCTGGTTTATTGGTCGTAATCTTCTGATGGAATTTGTTTACGACTCTGCTGATGCCGCTGGGCAAAATGGTGTCACTGTTACCACGTGGCACGCTTGTAAGTGGGCAATGGAGAAAATAGCCCAGGAGCGTCCTGATATCAACATCCGGGAATATTTCGTTGAAACAAAGTTGAGTGGTGATAAAAGTGCACTTCCTAAAAACTACATAACGGGTCGTGGAATTGAGGTTCAGGCCGAAACTTATATTTCTGAGTCTACATTGAAAAGTGTGCTGAAGGTTAGTAATAACTGA

Transcript

rna-ACROYT_G008354.t0

ATGTATCTCTTCGGTCGCAAGTTCGTACTTCGAACTGATCACAAACCCCTGCTGAAGATCTTTGCACCGGACTCTGCTACACCAGTGTTGGCAGCAGCAAGGCTTCAGCGATGGTCACTCCTCCTATCCTCATACCACTACGAGATCGAGTTCAAGCCCTCTGCCGAAGTAGCTAATGCTGATGCTCTATCAAGGCTCCCGCTTAGTTACAAGAAGGATGCAAGCGTCGAAGAGGAAATATTCCATGTAGCCAGCCAGCAGTTAAACAAGCACCCGGTCTCGGCTACAGATATTGCTAGAGAGACTGCAAGGAACCCAACCACCGCAAGGGCCTTGTCTCTGACACAGCATGGTTGGCCTAACAACTTCTGCACCGACCCTAACCTCAAACCATACTTCCTTCGCCGACATGAGCTCTCCTTTGAGCAAGGCTGTCTTATGTGGGGTATGCGAACCATTGTACCACCTACCTTACGACAACCCATCCTGAATGAGTTACACAGAGCACATCCTGGAATCGCACGCATGAAGGCAACAGCCCGCAGTCATGTATGGTGGCCAGGAATAGACAGCGACATTGAGGAGACCGCTCGCAGATGCCAACAGTGCAGTAAGACCAGGAAAGCTCCCCCAGTTGCACCACTATCTCCGTGGTCATGGCCCACCGCTCCATGGCACCGCATACACATTGATTTTGCTACTCATCAATCCAATCATTATCTCATCGTGGTGGATGCACACTCTAAATGGCCTGAAGTAATTGGTCCTATGAAAACCACCACTGCAGAAAGCACAGCCAATGCCCTGCGCAGCATCTTCGCAAGATACGGGCTTCCAACTCAAGTTGTCAGCGACAACGGTCCACCCTTTTCATCCGTTGAAAATGAAGAATTCCTGCAGCAGAACGGTGTTCAGCGAGTACTCGTCTCCCCTTATCACCCATCCTCCAATGGATTAGCAGAGAGATTTGTTCAGACCTTCAAGCACGCCTTGGATTCATTAGCCTCAGATCCTGCCCGCTCTATACAGCAAGGGATACAGAACTTCCCTCTCTCTTATCGCAGTACTCCACACGCCACTACTGGAACTTCACCATCCAAGCTATTCTTGCAGCGAGAGCTACGAACAAGGCTGTCACTCACTAAGCCAGACCTCAGTAGTCACGTGGCCACACAGCAACGCAAGATGAAGTTCTACCATGACAGACATGCCAAGTTTAGAGAACTGTCTGTGGGCGACACTGTTCTGACACGTGATCACTTATCAAAGCAGAAATGGCAGTCGGGTACAGTGTTAAAGCACAGTTCCCCATATTCTTATCAAGTCCAACTAGATGATGGCCGAATTTGGAGACGCCATGTGGATGACGTTCTTCAGAACAATCCCGCCACTGAACCAGCAGAGCCACCAGCAGAACCAGCAGAGCCACCAGCAGAGCCAGCAGAGCCACCACCCATAGTTCCTGTCACCCCCGAACTGCGGAGGTCCACACGTgttccGCACAGAGGAAGCTACCAACTGGAAGACTGCGAAAGCAGGAGAAAATGGGTTGAAAAATTCACCTCCGCTTCCCTCTCAAACGTTGGACAATGGTGGGATCCTCGTACTTCCCAGGGATATTCCACTGAAAATCTAACAGGAAATATAGAAAACCCAATAGGATTGGCTAAGATTCCGCTGGGCGCAGCTGGCCCGCTGCTTATCAAGGGAGATTATGTGCAGGATGAACTAATTGTTTGTCCTTTTGCCACAACAGAAGGTGCTCTTGTCGCCTCTGTTTCTCGAGGTGCTACTGCTATCACCAGATGTGGAGGTATCACAGCACGTGTTATAAAGCGCCGGATCACGAGAGTACCACATTTCGTCACTGATTCCATGCACCAAGCTCACCAACTTTCTGAGTGGCTCATTGCTCATTTGGACGAGCTGAAAACAAAAGCAAGCGAGGTCAGCCAGCACTGCAAGCTTCAATCACTGGAACCCTGGTTTATTGGTCGTAATCTTCTGATGGAATTTGTTTACGACTCTGCTGATGCCGCTGGGCAAAATGGTGTCACTGTTACCACGTGGCACGCTTGTAAGTGGGCAATGGAGAAAATAGCCCAGGAGCGTCCTGATATCAACATCCGGGAATATTTCGTTGAAACAAAGTTGAGTGGTGATAAAAGTGCACTTCCTAAAAACTACATAACGGGTCGTGGAATTGAGGTTCAGGCCGAAACTTATATTTCTGAGTCTACATTGAAAAGTGTGCTGAAGGTTAGTAATAACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09575	Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans OX=6239 GN=K02A2.6 PE=4 SV=1
Q9YAS4	3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) OX=272557 GN=hmgA PE=3 SV=1
Q58116	3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=hmgA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000022 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00368 all species →	HMG-CoA_red	Hydroxymethylglutaryl-coenzyme A reductase	Family	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009023 all species →	Homologous_superfamily	Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily	Interproscan
IPR002202 all species →	Family	Hydroxymethylglutaryl-CoA reductase, class I/II	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR009029 all species →	Homologous_superfamily	Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004420 all species →	Molecular Function	hydroxymethylglutaryl-CoA reductase (NADPH) activity	Interproscan
GO:0015936 all species →	Biological Process	coenzyme A metabolic process	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAL9985901.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.