Gene detail

Detailed information of KAL9986002.1 in Oculina patagonica

Genomic Location: chr1:584442...595586
NR annotation: XP_020625752.1, protein SMG5-like [Orbicella faveolata]
Species abbreviation OPATA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G000055

Transcript

rna-ACROYT_G000055.t0

ATGTTTGCTATGAAGTTGGACGTGGTTAAAGTCTTGATGAACAATAACTATCCAATGCGGTTTATCAAGAGTTGTGATTCTCATCGCAAAGCTAATCGTCGTGTCTCAGACAGCAGCGACACTCCAAATGATGCCGCAACATCGTTTGTTGTTCTACCCTACGTGAAAGGCGTAActgaaagaatctcaaaagTTCTACGCAACAACGGGGTAAAAGTTGGCTTTAAACCACTTAACACGTTACGCACACGCTTCCCCAGACCGAAAGACAAACTCACAGCATTCCAGTCTAGATGTGTAGTTTACAGAGTTAACTGccttgactgcaattttacctattatggacaaacggacagagcgttagctactcgaattaaagaacatcaaagagcagtccgtgtttgcgacaaaaactctaagatcgcgcaacacgcgaacacgtttggccatgatatggatttcaatcatgcagcggtggtggacaaggcaggcgattaccacaagaggcttttcctagaagcgtggcattcgcagagggaccagaatgcgggaaatgaacacatagacatccctgatgtatataaCTCGCCTGAAATAAGCAGCGAGGACACTGGCCATCTGTGTCAGTCTGTGTTACAGGACTTCAGTAGTGTCCTGTCTGTGGACCCAGCCTCCTCAGGCACAAACAAGCCGTCACTTGAGAATGGTCTCGCCTCTCAGGAAAATGGCGGCGGCCTGGAGCATGACGTCACAGATGACGTGGAGGGCGTTATAAGTAGCTCTCTTATGGTGAAACTGGTTGTCATGGCAATAGCCACTGTGACCAGATTGCAGTCAAAGGGTTCTCAAGAATCGTCAGTAGCAACAGCCTTTACCTTAGCgtttctttctcttcttcttcAAAACTGTATTTCATCATTTGAGAACTTCTTAGCAAAAGAACATTCCAATCCCGAACACCCTGTAGCAAATGGGCCAACAAATGCCGCGCTCTTGCACAACGGTTTATCCAAGCATGAAAACTCTGTGCAGGGAAGCAAAGCGCAGAGCAATTTTAATGAAGCAAAGAAACTCAAGAAGGTCATGAAACATCGGCGACGAAGACGGAGGCGAAGAAATATCGATTACAGCTTCGAGAGTTATAGCGGCAGTGGAAGTGATTTGGATGAATCAGCAGACGAGGAGGAGGACGAAGATAGTGATTTGAGCGAAGGCGGAGGAGAGATTGACGAAATGCTGGATGATTTGATGAGCGAGGAGGAAGACAGTGAAGATGTTTGCATCGAAAGTGAGTCGGACAACGAGAGCGGAAACACTGGATCACTGCCCAAGACTGTGTTCTCTTCTGCGAATGGAAAGCACCACGAGAACGGAGCGTTCCCTAGATCAACTGAGAAGCTTCCCAGTCATCAAACTGTTCAGGACAAGCTGGGATTCAAGGCCGGTTTCTTGGGACAGAATGGAGTGTCAGTGGGAAAAATGTTCAGACCGGATTTGTTCAGTGATGTGAGCGACGCTGAAACGGAGTCATCCATAGCGTCCAGAGCTGAGATTCTTCGAGACTGTGTGGAGTCTAAGTTACTGAAGGCGATAGCAGGACAGAAACTACTACCAGCAATCAAAGTGTTGACGGACTGGCTGAGACTGAATGGACAACTGGTCATGACTTGTGTTGAGagcCTCAGTGCCTTGTGGTCCAGAATGGCTACTCTCCTAAACAAGTTTCCTTCTTCAGAGCAGATCATGGCTGCAGTTCCTTTACCAAGATTAGCAACATGGCGGAGTATCCTGGATGAGACGCTCGACGAAAACTGGGTCCAAACACGTGGTCTACCGGAAGACGTGTCGCTGTTAGGATTTACACCACTGGCCACGATACACAGCAGGCTCGACCGGAATTGGAGTAGGCTCACAAGGGACTGTCAGTACCTGGAGgcTGCAGTTCGAGTTCAATGTCTAAGAAGCTTTGGAATGAAGCTTGCCTCTACTCAGGAGCTGAGTTCGTTTGCGTGGGATCAGAACACTAAGCAGTTTCTAGGACCTCAACAGATGGCGGAACGAGAAAAACTGATGGCTGCTGATAAACGACACACTCCATCGCCTGTGGGAAATCAAGATCGTAGATCCAGAGTGATGAAGGTTATGGCTCAACAGTTACTACAGTCTGAAGTTGCTGAACTGGAAAGCACCCTTAAGACAGCTCCTCGTGGTGGTACAGTTTATCTTGTCCCTGATGCAATGGCACTGTGTACTCAGCTTCATCTGGTACGACGACTGATCGTCTCAGAGAAACTTGTCATTATAATTCCTATCCAAGTGATTTCCGCGCTTGACGAACTAAAGAAGTACGACAGTGGAGCGAGAGAGGCTACTAAGTTTTTGGAGCAGGAGTTCAAGAAGGGAAACAGATGGATCAGAGCACAAAAAGACAGCGAGACGATGGATGGAGGGCGGCGACGCGGACGTTATGAGGACGTGGCTGTGTGgcgATTTAATCAGATCATCAACTGCTGTCGCTTTTTCGTGAGTCAAACTGGCCAAGGCCTGGTTACATTACTGACTGGAGCTGCATCGTACGAGAGTCCAAAACGAGGCCAGAGAAAAGGCGTGACCTGCAGTGGTACCCGGGCCACCCCGGAGGCGGTGGAGCTGGCTCGGAGCTGTGGCGTCAATGTGGAATCACTTCGCGCGTTTTGCGCCCGATTCTGCAACCAGACCAAATCAGTTACGTGAGGTAACGTGGAAGTCCAGATGTTCTGGAAGTGCTAAAGATATAATGGGTTGTGTACGTGACCCTACCAACCAATACTCTAGGGCTGAAAAACGACGTGTGTCCCAGGACTACCAACCAAGCTGGGACTGAGCAGTCTAGATAGAGTAACTACCACAGGGTGACCAGTGGTTTCCACTTTGTTTAAAAAGGTGTTAGAGAGTAACCTTTAAGTATGGCACTCGCGCTTGAGTTAACTTTGTAAAAGTGGTTAACGGCGGACTTTTTTCTGCGGCCTTTAAAGCTTTCATGGCAAGCTCAGCTTTCATGGCAGGTATATCTCGACTTTTCTGTATTTCGAGCTTTTTTCAGTTGACTTTGCGCCAAAAGGAATAATTAAGTCGAGCAATCTAGACCACTGTAATGTCAACCAGTCCTCATACTCTCCCCCTCAGGTATGATTTCTTCAGTTGTGGGAGGGTGGGGTCGGGAGTAATTTGTACTCTGGTCAATGGGAAAACTTCAAACGCCACTCGGGTTTTCCGGAAGTGGAAGTAGTAGAATTAAATGTAGTAAACGAGTCAACAATTAGTTTGTGCTCTTAAAAGTCTTCATTAAGAAGCTACATGTTTGTGAAAACCTTTCCAGATTTATTTCAAAGGTTGTGATTTTAGGACGAGAAGGGGAAACTAGTTCCTTTTTCATTTCGTTTATTAAAGGCCGTTAGTAAGGCCTAGCTCATGTGTTATGGTGATGACTTTTGGTCCAAAGATTGAATTTAAAAGTGTGTCTGTTATCCTAAACATTAATTGTTATTAACTGTGGCAAGATTTGGAGGCTAGTATAAAGATTTTACCAGATCGGCATCTCTCACTGGAAAACTATGATAAAACTTAGGGTCGGTAAACGACAGTCTAGCTCTCCTTACTTTGACATTGCTATTTCGTTTGAAAAGAGCTTATGCGAAAACCCTTTCTCACGATCGGTGTCTAACAAATCGTAAAACTTTCTCGCTGTGAGTAGGACTACAAACTGCTAAAGTTCCCGTGTTTTGCTTTCATGATTCGGTTTTCTGTAATAGCAGGACCCAGGATATTCCAACACGTGTGCTTAGGTTTTGTGAAGTGAATGAAAAGCAAAGTTTCACACAATCTTTCTCGTGTGATGTAAGACGATagttttttcaaagttctaaaATTAAATGTATGTTGTATAATGAATGTAGCATGAGATTCGACTGTGTTTTCACTGATTCTCTTCACACCTTTCCAGTAAGATTAAAATGAAGTGGGAAATAACATAGTAAAGTGGTAATATAGTGACTGTAGTATTTAATTAAGTCAAGCATTCATGTGTTGCTAGAAAATTTATTTGTGCTTAATTAGTGAATTCGTGTGTTGCTTGCAATCTCTCTTCTCTTGAAGACCGACGAGCGGTTGTTGCCTAGGTTACGAATATGGCGAGAAGGGAGTGGGGCCTAACCCTCCTGGGTTCACGCCCCACTGAGTTAAGAAGAAATAACTTCGAGAGAGGAACGGACTGCAAGCAATTTTTAATGTGCGTATTGTAAAATCAACTGTTCGATCTTTGTGACAATGAATATGGTGAAGGTAAGTTTTCTCATAAGTGTTGTAATCGACGTTTAAAATGGCAACATGTTTACACAAACCACACTTGTATAAGAATAGATTCGATTCAATAAAGTGTCTACATGTAGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZPY2	Nonsense-mediated mRNA decay factor SMG5 OS=Mus musculus OX=10090 GN=Smg5 PE=1 SV=2
F1R7R1	Nonsense-mediated mRNA decay factor SMG5 OS=Danio rerio OX=7955 GN=smg5 PE=2 SV=1
Q9UPR3	Nonsense-mediated mRNA decay factor SMG5 OS=Homo sapiens OX=9606 GN=SMG5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006483 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10373 all species →	EST1_DNA_bind	Est1 DNA/RNA binding domain	Repeat	Interproscan
PF13638 all species →	PIN_4	PIN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045153 all species →	Family	Est1/Ebs1-like	Interproscan
IPR018834 all species →	Domain	DNA/RNA-binding domain, Est1-type	Interproscan
IPR002716 all species →	Domain	PIN domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15696 all species →	SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0005697 all species →	Cellular Component	telomerase holoenzyme complex	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0070034 all species →	Molecular Function	telomerase RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAL9986002.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.