Gene detail

Detailed information of KAL9986998.1 in Oculina patagonica

Genomic Location: chr1:13718267...13731440
NR annotation: XP_020625869.1, uncharacterized protein LOC110063250 [Orbicella faveolata]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ACROYT_G001232

ATGGCGGACGCACCAGGCTTGTCGGCGAAAACTACTAAAATTTGTAGATTCTTCCAGAGCAAAAAGGGTTGCAAATTTGGAAATGAGTGCCAGTTCTTACATCCAGAAAGCGTATCAAATGATTCTGGAAGTATTTCGCAAGAAGCTGGTAAAGTGCTTGATGATATGAACAAGAAACCTGATACAGCTGACCTTAGCAAAACTTCACCAAGACCAAAAACTTGTAGATTCTTTAAGAGCAAGAGGGGGTGCAAGTTTGGAAATGAGTGTCAATTCTTACATCCAGAGAAGGTATCAAATGAATCGGAAAGTATGACAAATGAGGTTGATGAACCTAATGATGAACAGAAGACATCTGATCCTAACATTACTGACTTGAGCTCAAAATCAGTAACACCAAACATTGACAACATTGAAACTCTAGTTGAGGAGAAGGGAAAGAAAGAAAACAAAGATTCTTCAGACAGACAAGGACTTGTGTGTAAATTCTTTCAGAAAAAGAAAGGTTGCTTAAGAGGTAATAGGTGTCCCTTTGTGCATGTGATTTCTGGTGATGGTGCAACCTCTAAGCCTGTAACAAAGGAAATCCCTAAAAAAACAAGTAAGCCTACTTTGCCAAGTAAAAAGATCCCTCATCAAAGAAATAAAGTTACCAAGTCTGACACTGATAACAAACCGGTTACTAAACAGCCAACTGATTCTGCCAATCTGCAGTCAGAAAATCAGAATAAGGAACGTGACAAGCAGGCAGGTGGACAAGGAACTCCACTGCTGCCCAAGAAAAAAGATGAGTCAGCAAAAGGCACAAGCATGGGTCTTGAGGATTGTATTCGTGAATGTAAGAGGCTTCGCTCAACTGAAATACAACAACTTAAGAGACGTTTTAGAAGCCAGAATGGTTACTGTGAAATCCAAGAGAACGTTTCATACAAGTTCAAGTTCAAACCAACAGATCCTGACTGGCCATTTAGCATTGAAGCAGTAGGCCTTACAGTGACCTTTCCAGAGGATTATCCATTACATATTTTTGCCATGTCTTTATCTGAGGAACAAGACCTTCCTACAGAAATTATCAATTTTGGTACTCAAAAAATTAAAGAATGGGCAATGAAGCAAGAGCAAATATGTATTGATCAAGGAATTCTGAAGCTGTACTTTCGCCCATTCCTGCGTTGGTTTGACAGTAATCTAGAATCTCTCTTCATTGATGGTGGAAGGCAGATGAGAAGAAATATTGTTTCAAGTATCACAGCACATGGGACACCAATTAACAATCCGGAACAAGACAGTCTCAATGTATCAGATTTGACTACTGGTTCAAGAGAAAATCATGAACGTGTGATAGTCAACGACCATGAGAATCAATGTAGTATAAAACAAGTTGACAGTGAACATGTGAAAAGAACACAGAATAATGGATCATCAGACGGTTGTCAGATGTTTGAAAAAGAGGATGGTAAAACAGAACAAAGCTTGTGTAAAGTTATTGAACTTAAAACCATACAAGGCACACAAAATGATACCTTACAAACATCTACAAGTGACACTGACGCTAGCAACATGTCTGAAATGGATGATTTAAAGCAAGTAGTTGGCATGGGCAGTACATTTTCAACTGTAAGCATGCATGATTCCAATGAGGAAGACAAATTTGCAAGTAAAGACACAATGCAGTCAAATCAATCAGAAACTCACTGTCAAGATACAGTTGCCTCAAGCACTGTTAGGAGAGGAACAGAAATTCAGTTTAAGGGGCTTAACTTGGAAGAGAATGTGAGCACCTTGAGAGGAAACAGAATAGTGTTGACCTTAGAGTGCAACAGGTGCAGGCAGAGGATTGATCAACAGTTGTCGGTATCAGGTCCTGTCAGCAAACAGTGTACCAGATGTGCTTCGGTATTTGCTGTGAACTACAGACCAGCTATTATTCATCTGTTTTCATCTGTTTTGGGATATTTAGACTTAGATGGTTGTCTCCCATTTGATGTGGTTCTACCAGAAAGTGAGTTGATGTTAGGATGTCTTCACTGTTCCAAAGAAACATCAGTCAAGGGTCTGCAGTATGGAGCGAACAGGAGCTGGTGTACTCACTGTCATACAAAACTTGGATTCCACATACAATCAACTCGCTTCCAGGAGTTACAAATCAGTGCAACTGCAACAGCTTCCCTTAAGAAAAGCAAAGATTCTAGCGCTCTTTCTAAACCCAAGAAGCCACCGAGCTCAGGAATCAAAGAAGGTCAGCCACTACCAGCCAATGGAAGCTGTAAACACTACAAGAAGAGTTTTAGATGGCTCAGGTTCCCTTGTTGTGGCAAGTGTTACCCATGTGATTTATGTCACGAAGAAAAGGAAGATCATGAAATGAAATATGCCACAAGAATGGTCTGTGGCTTTTGTTCAAAGGAACAGCCGTACTCACAGCAGCCCTGCAGTGGTTGTAAGGCGGCCGTGACTAAGTCACGCTCTGCTCACTGGGAAGGAGGTAAAGGATGTCGTGACAAGGTGACCATGAGTAGAAATGATGACAAAAAATACGGGCAGTCCGGAAAGACTGTGTCACGCAAAGCACAGAAGCAGTCCGAAGGAAAGGGGAAAGGGAAGGGTAGTAAGAAGAAGTGA

Transcript

rna-ACROYT_G001232.t0

AGATGGCGGACGCACCAGGCTTGTCGGCGAAAACTACTAAAATTTGTAGATTCTTCCAGAGCAAAAAGGGTTGCAAATTTGGAAATGAGTGCCAGTTCTTACATCCAGAAAGCGTATCAAATGATTCTGGAAGTATTTCGCAAGAAGCTGGTAAAGTGCTTGATGATATGAACAAGAAACCTGATACAGCTGACCTTAGCAAAACTTCACCAAGACCAAAAACTTGTAGATTCTTTAAGAGCAAGAGGGGGTGCAAGTTTGGAAATGAGTGTCAATTCTTACATCCAGAGAAGGTATCAAATGAATCGGAAAGTATGACAAATGAGGTTGATGAACCTAATGATGAACAGAAGACATCTGATCCTAACATTACTGACTTGAGCTCAAAATCAGTAACACCaaacattgacaacattgaaactCTAGTTGAGGAGaagggaaagaaagaaaacaaagattcTTCAGACAGACAAGGACTTGTGTGTAAATTCTTTCAGAAAAAGAAAGGTTGCTTAAGAGGTAATAGGTGTCCCTTTGTGCATGTGATTTCTGGTGATGGTGCAACCTCTAAGCCTGTAACAAAGGAAATCCCTAAAAAAACAAGTAAGCCTACTTTGCCAAGTAAAAAGATCCCTCATCAAAGAAATAAAGTTACCAAGTCTGACACTGATAACAAACCGGTTACTAAACAGCCAACTGATTCTGCCAATCTGCAGTCAGAAAATCAGAATAAGGAACGTGACAAGCAGGCAGGTGGACAAGGAACTCCACTGCTGCCCAAGAAAAAAGATGAGTCAGCAAAAGGCACAAGCATGGGTCTTGAGGATTGTATTCGTGAATGTAAGAGGCTTCGCTCAACTGAAATACAACAACTTAAGAGACGTTTTAGAAGCCAGAATGGTTACTGTGAAATCCAAGAGAACGTTTCATACAAGTTCAAGTTCAAACCAACAGATCCTGACTGGCCATTTAGCATTGAAGCAGTAGGCCTTACAGTGACCTTTCCAGAGGATTATCCATTACATATTTTTGCCATGTCTTTATCTGAGGAACAAGACCTTCCTACAGAAATTATCAATTTTGGTactcaaaaaattaaagaatgGGCAATGAAGCAAGAGCAAATATGTATTGATCAAGGAATTCTGAAGCTGTACTTTCGCCCATTCCTGCGTTGGTTTGACAGTAATCTAGAATCTCTCTTCATTGATGGTGGAAGGCAGATGAGAAGAAATATTGTTTCAAGTATCACAGCACATGGGACACCAATTAACAATCCGGAACAAGACAGTCTCAATGTATCAGATTTGACTACTGGTTCAAGAGAAAATCATGAACGTGTGATAGTCAACGACCATGAGAATCAATGTAGTATAAAACAAGTTGACAGTGAACATGTGAAAAGAACACAGAATAATGGATCATCAGACGGTTGTCAGATGTTTGAAAAAGAGGATGGTAAAACAGAACAAAGCTTGTGTAAAGTTATTGAACTTAAAACCATACAAGGCACACAAAATGATACCTTACAAACATCTACAAGTGACACTGACGCTAGCAACATGTCTGAAATGGATGATTTAAAGCAAGTAGTTGGCATGGGCAGTACATTTTCAACTGTAAGCATGCATGATTCCAATGAGGAAGACAAATTTGCAAGTAAAGACACAATGCAGTCAAATCAATCAGAAACTCACTGTCAAGATACAGTTGCCTCAAGCACTGTTAGGAGAGGAACAGAAATTCAGTTTAAGGGGCTTAACTTGGAAGAGAATGTGAGCACCTTGAGAGGAAACAGAATAGTGTTGACCTTAGAGTGCAACAGGTGCAGGCAGAGGATTGATCAACAGTTGTCGGTATCAGGTCCTGTCAGCAAACAGTGTACCAGATGTGCTTCGGTATTTGCTGTGAACTACAGACCAGCTATTATTCATCTGTTTTCATCTGTTTTGGGATATTTAGACTTAGATGGTTGTCTCCCATTTGATGTGGTTCTACCAGAAAGTGAGTTGATGTTAGGATGTCTTCACTGTTCCAAAGAAACATCAGTCAAGGGTCTGCAGTATGGAGCGAACAGGAGCTGGTGTACTCACTGTCATACAAAACTTGGATTCCACATACAATCAACTCGCTTCCAGGAGTTACAAATCAGTGCAACTGCAACAGCTTCCCTTAAGAAAAGCAAAGATTCTAGCGCTCTTTCTAAACCCAAGAAGCCACCGAGCTCAGGAATCAAAGAAGGTCAGCCACTACCAGCCAATGGAAGCTGTAAACACTACAAGAAGAGTTTTAGATGGCTCAGgtTCCCTTGTTGTGGCAAGTGTTACCCATGTGATTTATGTCACGAAGAAAAGGAAGATCATGAAATGAAATATGCCACAAGAATGGTCTGTGGCTTTTGTTCAAAGGAACAGCCGTACTCACAGCAGCCCTGCAGTGGTTGTAAGGCGGCCGTGACTAAGTCACGCTCTGCTCACTGGGAAGGAGGTAAAGGATGTCGTGACAAGGTGACCATGAGTAGAAATGATGACAAAAAATACGGGCAGTCCGGAAAGACTGTGTCACGCAAAGCACAGAAGCAGTCCGAAGGAAAGGGGAAAGGGAAGGGTAGTAAGAAGAAGTGACTTTGTAAGAGTAGCTTATATCCGAGGGGCTTATGACCAGTAAAATAAGAACGTTTTGTATACCCAGAATTTTTGGGCGGTATTCAATTTTCTATTAGAGGTAAAAGCTTGAGAAAATGGAGCGTTCTTTACAATCAATTTAAAGCTTCACTAACATGCTTTGAAACGCAACAATACGATACCTAAATAAACGTCTTTGCTGCCTCAAAGTAAAAAGGGTTTATTAATCGTTTACCATTTAAGACTCTCGAAACGTTTGTAAGTCCTAAATTTACCGACTTTCGTAACATTCAAAAGCTTTGTTCCTTTACCCGTTGGTAAAGAATGCAAGTTTGTCTTAGACGTTTCATACATgaatttttcttctttatgAAATGTTTGTATATTGTCGCAGCTGAAATCAAGAATATGGATGAGTGGAGAAGTGTGACTAAAACGattaatatattatattgtaAATGCCATCGAAGTCCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60140	Uncharacterized protein C18H10.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC18H10.09 PE=4 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006325 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14608 all species →	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	Domain	Interproscan
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan
PF05495 all species →	zf-CHY	CHY zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR037274 all species →	Homologous_superfamily	Zinc finger, CHY-type superfamily	Interproscan
IPR008913 all species →	Domain	Zinc finger, CHY-type	Interproscan
IPR051767 all species →	Family	Nucleoporin NUP42 domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46527 all species →	NUCLEOPORIN-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005049 all species →	Molecular Function	nuclear export signal receptor activity	Interproscan
GO:0005635 all species →	Cellular Component	nuclear envelope	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAL9986998.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.