Gene detail

Detailed information of KAL9988388.1 in Oculina patagonica

Genomic Location: chr1:33083270...33093117
NR annotation: KAJ7339400.1, Small RNA 2'-O-methyltransferase [Desmophyllum pertusum]
Species Oculina patagonica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-ACROYT_G002826.t1

caaaatggcggcaatTTTGCTCACGTTTGAGACAGAtagatttttgtttaaaaaccgGTACTTCTAGCTTACCTCGGCACTTATATATACttttatttattccaaattgatATATTTCATGATTAAATTGAAACGGCTTATGGTAATCTTTGGCAATGGTTTGCAATGAGTTCTCAAGAGGTGACAGCCGAGCTCGACCATGAAAGTAGTAGGGAGGAAAAACAGCATTCTGCAGTGACGGAAAATGAAGAAGAATTCAAAGGTCCGAGATTTTATCCACCGGTCTATCGTCGACGATACGCTGCAGTATGTGAGTTGGTAAagaaacacaaagcaaaaaagGTTCTTGATTTTGGCTGTGCTGAAGCAAAACTTATCAAATCCTTGATCAGTCAAGAAACACTTACTCATTTAGAAGAATTGGTTGGTGTTGACATCAACAAAGAGCTTCTGGAGGAGAACAAATTCCGTATTCAACCACTCACATCAGATTACTTGAGACCTCGCACTCACCCATTCAAAGTCTCTTTGTATCAGGGTTCCATAGCTGAAGCAGATAAAAGATTCATAGACTTTGATGTGATTGCTTGTATTGAACTcatagAGCATCTTGAACCTGATATTCTTAAATCAATGCCTGAGGCAGTGTTTGGTCAACTGTCACCAAAGGTTGTTATGGTAACAACACCCAATGTCGAGTTCAATGTCTTGTTTCCAGATCTGAAAGGATTCAGACATTATGATCACAAGTTTGAATGGACAAGAGCAGAATTTCAGGAATGGTCAAATTCCCAGGCTAACAAGTATCATTATACTGTAACATTTGATGGCATTGCTCCAGGCCCAGAAGGCTCAGAGCACCTGGGTTGTTGTTTCGCCTACACaaaagtcgattcgcctacacttttttttctcgaatttGAAGACTTCATCTTTAGTATAGCGTATTTCTTAAGGTCAAATTCCCAGGCTAACAAGTACCATTATACTGTAACATTTGATGGCATTGCTCCAGGCCCAGAAGGCTCAGAGCACCTGGGTTGTTGTTCACAAGTGGCTGTGTTTGAAAGGATTTCACCTTCAATTCCAACAGATGAGTCAGAAATAGGCCAGCCATATAATCTGATTGCAGAGGTCCAGCACCCTTTCAGAAAGGACACAAGAACAGAGGAGGAAAAAATCTTGCATGAGGTGGAATATATTCTGTGGGTGCTGTCTTCCCAGGAGGAGGGTGATTCCCCAGATGATAAGACTGATGACAAGTCCCAAGCATGCAGTGATGAGGACAGTGTGAGTAATGATATGGAAGATGAAGATTGCATGGACAGTACAAGTACGGTTAAAGATGATAAAGCCTGCATGTACTCACTTGAGAAGCTACTCAGCTTTCCATCTCTTCACAAGCTGTGTGGCGACATTCAAAAGCTCAGAGATGTAATCAAGGCTTCCTCATCATTTCATCTCACTGAGGATGGCTGTGGAGTCCTGTGGCAGAACCCATCATCACAACATTGGAGCAGTGATGAAAGCGACGCAGGTTGGGATTCATGCTATGAAGATCAGGTGGCTGATGAATCCAAAAGACCTGCTCCCACATGGGAAGGACCTGAAAACTGGGACGTGGATGAGTACTGTTCATCTTGTGATGCATACAGCCTTAATGCGGCAACCGAGACAGAGGTCTGTTGGGATTCTACAAATGATTATAATTCTAAATTCTGGAATGGTGAGGACTGGAGTGAACTTGAAGACTGTGGAGTTCAGGAGGAGTTTGAGGAAGAACATAGTACAAACTTTCATTACAGTGACCATGCAACAGTTCCACAGGAGAGTGATGGATCATTGGGTAATGATAGTGATGACAATGACATTGATGACCTTGTTTGGATTACAGAGAATTGTACAATAACTGATTCTGACACAAAACAATAATCCTTGAATGTATTAAATGTCTTAAATGCCATGTTTAGTCCCCACTCATGGGATGACCCTGGATTTCAGCTGTATTTATCTCTGGTCATCCTACTGTTCATGTTTGAGGGCCATTATTACAGGTGTCCCTCACATCAAATAAGAGTTCAATAAGAAGAAAACCTTATTACCGTTCCTCTGACTGgttctgtgtttgtttgttccaCCACTTTTAATATTATATCTGTGTAGGACTAGTGGAAAGCCTGGACTCAAAAAGTGAGGTGACTGGGGCAGctgttaaaataatattaacaaaAATGTTCGGAACATAGTGAATCATACCAGTCGTATGTGGATTTAAAATTCTAAATGGCCACCATACAACACAGAACCAGTCTTTTTATTGAACTCTCATTTGATGTGAGGCCCCACTGTGCTATGATCCTTgctaagaattttttatttgttgccaATATTGAAGGTGTTAATGTTCCAACCACAActtatataaataaaataaataggtTCTTTATTTTGATCAATAGATTATAAATATACATCAAAATATTAGATACTATATAAAAATTTACTATTTGAGAGTGAACAAGCAACATTTATAAATGCTAAAATGAATATAAAATTCCAATCCCTTAGTTAAATTTAAATGCTAATATGTATTTATATTTGACCCTTCCTGTGTTTATACATCTCCCATTTTGCATGCTTGCACAATCATTTAGTTACGTTGGGTTTATAAATGGGATGtaaattttattatgttattagTAAGAACAATAATATTATACATGATAACTTTGAATGGGAATTTTTAATCATATACATGTAAGTTATGCTGTTGTTGTTGAAGAGATCATGACTTCGGAAAGACTTTTAACAGCCTCTGCGTTTTTTCTATTTGATTTATTCTGTTTGCAAATTTCAATGTAACATGTTTAGGTTATTGAGTTATGTGAATCCTGTTTGCAACACGGGTCTCTGGGATTAATTACAGGAGTGCACCATTCAGTTCTCTTTTGGCTCAGCAAAGTTTTGTAGTTTTTCATTACcggtatttttcttttagattgaCCAAGACtgataaataatgtttttaaatcacCCTCACGTGGTGTTGTTTAGATTCAATAACTAGTGTACATTTGTATTTACCCTGTTTGTATAAGTTACCGGGTAAATATATCAATGTACAGATTTTATTAAAGggataataaaataaagtttacatgttttaatattttgtctTTTGTAATCGACTGAGAACAGTCCCAGTATGTCTTCTGTTCAATTCTAAAGAAACCATCTTGAAAGTTATGGGAGTGTTAGGATTGGGTTAGCCTCCCATGCAGTCAATTTAAGGGGTGATCTTAATTCACTCCTCCCGCCAAGAGAGAGGAGAGAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32PY6	Small RNA 2'-O-methyltransferase OS=Rattus norvegicus OX=10116 GN=Henmt1 PE=2 SV=1
Q8CAE2	Small RNA 2'-O-methyltransferase OS=Mus musculus OX=10090 GN=Henmt1 PE=1 SV=1
E1BVR9	Small RNA 2'-O-methyltransferase OS=Gallus gallus OX=9031 GN=HENMT1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005321 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13847 all species →	Methyltransf_31	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR026610 all species →	Family	3'-RNA ribose 2'-O-methyltransferase, Hen1	Interproscan
IPR025714 all species →	Domain	Methyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21404 all species →	HEN1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001510 all species →	Biological Process	RNA methylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008171 all species →	Molecular Function	O-methyltransferase activity	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAL9988388.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.