Detailed information of KAL9989216.1 in Oculina patagonica

Genomic Location: chr1:43516668...43526727
NR annotation: CAH3155455.1, unnamed protein product [Porites lobata]
Species Oculina patagonica · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96J01THO complex subunit 3 OS=Homo sapiens OX=9606 GN=THOC3 PE=1 SV=1
Q8VE80THO complex subunit 3 OS=Mus musculus OX=10090 GN=Thoc3 PE=2 SV=1
Q29RH4THO complex subunit 3 OS=Bos taurus OX=9913 GN=THOC3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007377 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07676
all species →		PD40WD40-like Beta Propeller RepeatRepeatInterproscan
PF12894
all species →		ANAPC4_WD40Anaphase-promoting complex subunit 4 WD40 domainRepeatInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR011659
all species →		RepeatWD40-like beta propellerInterproscan
IPR024977
all species →		DomainAnaphase-promoting complex subunit 4-like, WD40 domainInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR040132
all species →		FamilyTREX component Tex1/THOC3Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22839
all species →		THO COMPLEX SUBUNIT 3 THO3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000445
all species →		Cellular ComponentTHO complex part of transcription export complexInterproscan
GO:0006406
all species →		Biological ProcessmRNA export from nucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12880THOC3; THO complex subunit 3-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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