Gene detail

Detailed information of KXJ04417.1 in Exaiptasia diaphana

Genomic Location: LJWW01003913.1:1...806
NR annotation: KXJ04417.1, DNA-directed RNA polymerase subunit alpha, partial [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0M573	DNA-directed RNA polymerase subunit alpha OS=Christiangramia forsetii (strain DSM 17595 / CGMCC 1.15422 / KT0803) OX=411154 GN=rpoA PE=3 SV=1
A6GZ73	DNA-directed RNA polymerase subunit alpha OS=Flavobacterium psychrophilum (strain ATCC 49511 / DSM 21280 / CIP 103535 / JIP02/86) OX=402612 GN=rpoA PE=3 SV=1
Q5L8D6	DNA-directed RNA polymerase subunit alpha OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=rpoA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012164 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01193 all species →	RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	Domain	Interproscan
PF01000 all species →	RNA_pol_A_bac	RNA polymerase Rpb3/RpoA insert domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011263 all species →	Domain	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Interproscan
IPR011262 all species →	Domain	DNA-directed RNA polymerase, insert domain	Interproscan
IPR036603 all species →	Homologous_superfamily	RNA polymerase, RBP11-like subunit	Interproscan
IPR036643 all species →	Homologous_superfamily	DNA-directed RNA polymerase, insert domain superfamily	Interproscan
IPR011773 all species →	Family	DNA-directed RNA polymerase, alpha subunit	Interproscan

PANTHER

No PANTHER signature was recorded for KXJ04417.1 in Exaiptasia diaphana.

Gene Ontology

GO term	Category	Description	Source
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ04417.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ04417.1 across 72 RNA-seq samples of Exaiptasia diaphana. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

0TPM > 0

2Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	0	0.00	0.00
whole animal · symbiotic	36	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.