Genomic Location: LJWW01003085.1:1...1116
NR annotation: KXJ04747.1, Transposase for insertion sequence element IS904 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families
| CDS |
| KXJ04747.1 |
| Protein |
| KXJ04747.1 |
| UniProt accession | Description |
|---|---|
| P35878 | Transposase for insertion sequence element IS904 OS=Lactococcus lactis subsp. lactis (strain IL1403) OX=272623 GN=nisX1 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0019990 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00665 all species → | rve | Integrase core domain | Domain | Interproscan |
| PF13333 all species → | rve_2 | Integrase core domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001584 all species → | Domain | Integrase, catalytic core | Interproscan |
| IPR050900 all species → | Family | Transposase IS3/IS150/IS904 | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46889 all species → | TRANSPOSASE INSF FOR INSERTION SEQUENCE IS3B-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015074 all species → | Biological Process | DNA integration | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
KXJ04747.1.Transcript abundance of KXJ04747.1 across 72 RNA-seq samples of Exaiptasia diaphana. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole animal · aposymbiotic | 36 | 0 | 0.00 | 0.00 | |
| whole animal · symbiotic | 36 | 0 | 0.00 | 0.00 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR6202203 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202204 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202205 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202206 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202207 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202208 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202209 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202210 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202211 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202212 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202233 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202234 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202235 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202236 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202237 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202238 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202239 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202240 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202241 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202242 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202254 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202255 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202256 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202257 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202258 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202259 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202260 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202261 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202343 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202344 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202345 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202346 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202357 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202358 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202363 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202364 | whole animal · aposymbiotic | whole animal | not recorded | aposymbiotic | SRP120942 | 0.00 |
| SRR6202262 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202263 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202276 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202277 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202278 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202279 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202280 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202281 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202282 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202283 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202284 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202285 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202303 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202304 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202305 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202306 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202307 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202308 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202309 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202310 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202337 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202338 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202339 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202340 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202341 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202342 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202347 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202348 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202349 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202350 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202351 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202352 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202353 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202354 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202355 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
| SRR6202356 | whole animal · symbiotic | whole animal | not recorded | symbiotic | SRP120942 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM,
StringTie quantification over 72 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Exaiptasia diaphana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 0 | not in this network | - |
| Negatively correlated | 0 | not in this network | - |
This gene has no edge at all in the Exaiptasia diaphana network, in either direction — it is not one of the genes the network was built from (the network covers genes with enough expression variation across the transcriptome samples). The counts above are a property of the network, not a failed lookup.
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Exaiptasia diaphana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
| Assay | Sample | Peaks | Region |
|---|
No called peak overlaps this gene in 2 available assays. Either the gene is not near an accessible or marked region in those samples, or it is not represented in the peak caller’s annotation.
Browse the full epigenomic landscape of this species: ChIP-seq · ATAC-seq.
| Sample | Methylation profile |
|---|---|
| whole_animal_aposymbiotic_1 | open |
| whole_animal_aposymbiotic_2 | open |
| whole_animal_aposymbiotic_3 | open |
| whole_animal_aposymbiotic_4 | open |
| whole_animal_aposymbiotic_5 | open |
| whole_animal_aposymbiotic_6 | open |
| whole_animal_aposymbiotic_7 | open |
| whole_animal_aposymbiotic_8 | open |
| whole_animal_aposymbiotic_9 | open |
| whole_animal_symbiotic_1 | open |
| whole_animal_symbiotic_10 | open |
| whole_animal_symbiotic_11 | open |
| whole_animal_symbiotic_12 | open |
| whole_animal_symbiotic_13 | open |
| whole_animal_symbiotic_14 | open |
| whole_animal_symbiotic_2 | open |
| whole_animal_symbiotic_3 | open |
| whole_animal_symbiotic_4 | open |
| whole_animal_symbiotic_5 | open |
| whole_animal_symbiotic_6 | open |
| whole_animal_symbiotic_7 | open |
| whole_animal_symbiotic_8 | open |
| whole_animal_symbiotic_9 | open |
The DNA Methylation page locates this gene by scanning the bisulphite table, which holds one row per cytosine. For the largest datasets that scan takes a while to return; it does not mean the link is broken.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
