Gene detail

Detailed information of KXJ05830.1 in Exaiptasia diaphana

Genomic Location: LJWW01001396.1:2696...5723
NR annotation: KXJ05830.1, Cytoplasmic dynein 1 intermediate chain 2, partial [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0III3	Cytoplasmic dynein 1 intermediate chain 2 OS=Bos taurus OX=9913 GN=DYNC1I2 PE=1 SV=1
Q13409	Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens OX=9606 GN=DYNC1I2 PE=1 SV=3
Q5NVM2	Cytoplasmic dynein 1 intermediate chain 2 OS=Pongo abelii OX=9601 GN=DYNC1I2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006423 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

No Pfam domain signature was detected for KXJ05830.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050687 all species →	Family	Dynein Intermediate Chain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12442 all species →	DYNEIN INTERMEDIATE CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0010970 all species →	Biological Process	transport along microtubule	Interproscan
GO:0045503 all species →	Molecular Function	dynein light chain binding	Interproscan
GO:0045504 all species →	Molecular Function	dynein heavy chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ05830.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ05830.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

66TPM > 0

2Conditions

124.8Max TPM

71.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	67.81	124.84
whole animal · symbiotic	36	33	75.49	124.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	124.84
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	103.92
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	102.25
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	98.98
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	97.76
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	97.44
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	92.47
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	90.99
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	88.84
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	86.87
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	79.77
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.90
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.33
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	76.82
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	76.65
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	74.74
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.20
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.43
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	67.21
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.27
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	64.54
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	64.07
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.57
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.07
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.01
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.45
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.98
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.61
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.23
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.62
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.23
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.66
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.54
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	124.54
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	118.27
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	108.50
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	95.94
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	94.86
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	94.13
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	93.74
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	93.11
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	91.00
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	89.23
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	88.11
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	86.38
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	86.10
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	82.54
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.81
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.74
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	79.24
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	79.00
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	78.67
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	78.10
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	76.74
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	73.81
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	73.21
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	72.62
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	72.50
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.94
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.85
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.81
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.56
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.39
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.24
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.11
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.86
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.